Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.64720 * 61.69646 * 9 7 2 11 11 C 1.54600 * 110.72387 * 298.54353 * 9 7 2 12 12 C 1.53991 * 105.14041 * 219.69015 * 11 9 7 13 13 N 1.47900 * 107.05523 * 358.77189 * 12 11 9 14 14 C 1.39746 * 110.99489 * 145.84642 * 13 12 11 15 15 C 1.39271 * 120.86935 * 119.85091 * 14 13 12 16 16 N 1.32271 * 119.00689 * 179.72139 * 15 14 13 17 17 C 1.31797 * 120.89173 * 0.56205 * 16 15 14 18 18 N 1.31786 * 121.93848 * 359.70711 * 17 16 15 19 19 C 1.32269 * 120.89669 * 0.02562 * 18 17 16 20 20 C 1.48530 * 105.82377 * 25.33817 * 13 12 11 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09002 * 110.30636 * 338.60376 * 11 9 7 23 23 H 1.09004 * 110.30578 * 100.76835 * 11 9 7 24 24 H 1.08994 * 109.91763 * 118.13210 * 12 11 9 25 25 H 1.09005 * 109.91502 * 239.22690 * 12 11 9 26 26 H 1.08000 * 120.50398 * 359.97015 * 15 14 13 27 27 H 1.08003 * 119.02924 * 179.73221 * 17 16 15 28 28 H 1.07995 * 120.49340 * 180.02562 * 19 18 17 29 29 H 1.09001 * 110.66521 * 202.35739 * 20 13 12 30 30 H 1.08995 * 110.66819 * 79.22106 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8956 -0.7102 0.8992 11 6 4.0592 -0.5033 -1.2690 12 6 5.2715 -1.3509 -1.6969 13 7 5.4136 -2.4373 -0.7033 14 6 5.8794 -3.6090 -1.3058 15 6 7.0799 -4.1902 -0.9049 16 7 7.4831 -5.3024 -1.4965 17 6 6.7713 -5.8530 -2.4594 18 7 5.6333 -5.3311 -2.8709 19 6 5.1584 -4.2228 -2.3270 20 6 4.0599 -2.6376 -0.1258 21 1 -0.4850 0.8400 -0.0004 22 1 3.3031 -0.5011 -2.0542 23 1 4.3715 0.5157 -1.0407 24 1 5.0986 -1.7732 -2.6867 25 1 6.1703 -0.7342 -1.7082 26 1 7.6708 -3.7418 -0.1199 27 1 7.1311 -6.7588 -2.9247 28 1 4.2249 -3.8010 -2.6690 29 1 4.1258 -3.1115 0.8535 30 1 3.4380 -3.2275 -0.7989 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279971.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = 41.542759 kcal Electronic energy + Delta-G solvation = -14495.860031 eV Core-core repulsion = 12097.630919 eV Total energy + Delta-G solvation = -2398.229112 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.23119 -39.80980 -35.45099 -34.73665 -33.63503 -30.61716 -29.94884 -26.65880 -25.67058 -24.47602 -22.15932 -21.47566 -19.01649 -18.63338 -18.58647 -17.48383 -16.40570 -16.14536 -15.79290 -15.04506 -14.72198 -14.59873 -14.57203 -13.94564 -13.70090 -13.19582 -12.85293 -12.50088 -12.20568 -11.92596 -11.82573 -11.72644 -11.53342 -11.06604 -10.74426 -10.63849 -10.29640 -9.45701 -8.29799 -6.35117 -0.21646 0.00499 1.35342 1.39811 1.49468 2.35054 2.70161 2.75062 3.06102 3.16951 3.28089 3.52782 3.79946 4.01564 4.10404 4.19889 4.36635 4.46764 4.67386 4.76793 4.84062 4.97415 5.08315 5.19938 5.27872 5.46304 5.56508 5.74876 5.78903 6.18755 6.30648 6.71222 7.02312 7.31205 8.86636 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.058779 B = 0.007311 C = 0.006974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.247927 B = 3829.130284 C = 4013.661887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.016 3.984 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.242 1.242 6 H -0.297 1.297 7 C -0.518 4.518 8 H 0.034 0.966 9 C 0.013 3.987 10 H 0.041 0.959 11 C -0.140 4.140 12 C 0.050 3.950 13 N -0.475 5.475 14 C -0.018 4.018 15 C 0.172 3.828 16 N -0.523 5.523 17 C 0.279 3.721 18 N -0.530 5.530 19 C 0.112 3.888 20 C 0.063 3.937 21 H 0.266 0.734 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.193 0.807 27 H 0.228 0.772 28 H 0.160 0.840 29 H 0.078 0.922 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.994 -5.119 -3.997 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.182 4.182 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.165 1.165 6 H -0.224 1.224 7 C -0.556 4.556 8 H 0.052 0.948 9 C -0.006 4.006 10 H 0.059 0.941 11 C -0.178 4.178 12 C -0.076 4.076 13 N -0.197 5.197 14 C -0.117 4.117 15 C 0.005 3.995 16 N -0.237 5.237 17 C -0.008 4.008 18 N -0.244 5.244 19 C -0.055 4.055 20 C -0.062 4.062 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.116 0.884 26 H 0.210 0.790 27 H 0.244 0.756 28 H 0.177 0.823 29 H 0.096 0.904 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.563 -5.723 -4.034 17.066 hybrid contribution -1.464 1.297 -0.193 1.966 sum 14.100 -4.425 -4.227 15.371 Atomic orbital electron populations 1.70052 1.08342 1.28114 1.52471 1.25849 0.95328 1.03037 0.93960 0.85912 0.79473 0.78555 0.79383 1.18737 1.16502 1.22439 1.21183 0.90874 0.93037 1.50499 0.94799 1.19965 0.93374 0.92721 0.94580 0.94134 1.22817 0.96509 0.99027 0.99484 1.22954 0.99152 0.92513 0.92965 1.62476 1.25135 1.03065 1.29041 1.20985 0.98083 0.95639 0.97008 1.23568 0.91403 0.88913 0.95609 1.68555 1.34637 1.10514 1.09950 1.25618 0.86267 0.99025 0.89860 1.68381 1.15191 1.11351 1.29508 1.23936 0.99067 0.90857 0.91672 1.23180 0.85818 0.98222 0.99026 0.92528 0.92299 0.91884 0.93119 0.88392 0.78973 0.75561 0.82263 0.90363 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.06 13.96 21.45 0.30 -57.76 16 2 C 0.02 0.88 5.46 84.65 0.46 1.34 16 3 Si 0.94 42.53 24.73 68.60 1.70 44.22 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.24 -10.00 6.38 99.48 0.63 -9.37 16 6 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.52 -28.22 9.00 25.60 0.23 -27.99 16 8 H 0.03 2.06 8.03 -2.91 -0.02 2.04 16 9 C 0.01 0.57 2.46 -10.33 -0.03 0.54 16 10 H 0.04 1.79 7.36 -2.39 -0.02 1.77 16 11 C -0.14 -5.28 4.69 31.47 0.15 -5.13 16 12 C 0.05 1.51 6.54 86.45 0.57 2.08 16 13 N -0.47 -14.70 5.30 -682.02 -3.62 -18.31 16 14 C -0.02 -0.51 4.87 38.37 0.19 -0.32 16 15 C 0.17 4.18 11.26 84.88 0.96 5.14 16 16 N -0.52 -12.62 10.43 -199.55 -2.08 -14.70 16 17 C 0.28 6.35 12.27 180.89 2.22 8.57 16 18 N -0.53 -14.48 10.43 -199.56 -2.08 -16.56 16 19 C 0.11 3.23 9.21 84.87 0.78 4.01 16 20 C 0.06 2.35 5.84 86.65 0.51 2.86 16 21 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 22 H 0.06 2.39 7.80 -2.39 -0.02 2.37 16 23 H 0.06 2.27 5.94 -2.39 -0.01 2.25 16 24 H 0.05 1.44 6.75 -2.39 -0.02 1.43 16 25 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 26 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 27 H 0.23 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.16 4.70 7.20 -2.91 -0.02 4.68 16 29 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.04 1.50 6.63 -2.39 -0.02 1.49 16 Total: -1.00 -63.18 247.45 1.31 -61.87 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.07 Total: 10.15 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 6.03 Total: -8.91 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -7.48 Total: -107.33 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.70 Total: 44.22 kcal Total: -63.18 1.31 -61.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279971.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.410 kcal (2) G-P(sol) polarization free energy of solvation -63.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds