Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99768 * 2 1 4 4 H 1.48504 * 109.47074 * 264.85470 * 3 2 1 5 5 H 1.48502 * 109.47205 * 24.85047 * 3 2 1 6 6 H 1.48500 * 109.47423 * 144.85128 * 3 2 1 7 7 C 1.37875 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00020 * 359.19459 * 7 2 1 9 9 C 1.50695 * 120.00231 * 179.18076 * 7 2 1 10 10 H 1.08998 * 110.87697 * 329.13548 * 9 7 2 11 11 C 1.55397 * 111.05584 * 92.87182 * 9 7 2 12 12 C 1.54316 * 102.90164 * 153.65298 * 11 9 7 13 13 N 1.47446 * 107.37138 * 337.89323 * 12 11 9 14 14 C 1.39735 * 111.00061 * 236.66627 * 13 12 11 15 15 C 1.39275 * 120.86907 * 239.59358 * 14 13 12 16 16 N 1.32267 * 119.00685 * 179.71745 * 15 14 13 17 17 C 1.31797 * 120.89413 * 0.56536 * 16 15 14 18 18 N 1.31790 * 121.93644 * 359.70776 * 17 16 15 19 19 C 1.32263 * 120.89566 * 359.97438 * 18 17 16 20 20 C 1.47848 * 108.56427 * 358.93276 * 13 12 11 21 21 H 0.96996 * 120.00407 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.67979 * 35.34458 * 11 9 7 23 23 H 1.09003 * 110.84587 * 272.03365 * 11 9 7 24 24 H 1.09002 * 109.89095 * 218.40783 * 12 11 9 25 25 H 1.09002 * 109.89083 * 97.38407 * 12 11 9 26 26 H 1.07997 * 120.49779 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.02774 * 179.67910 * 17 16 15 28 28 H 1.08007 * 120.48980 * 179.97438 * 19 18 17 29 29 H 1.08993 * 110.37260 * 142.92638 * 20 13 12 30 30 H 1.09005 * 110.36874 * 265.15328 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6053 1.9837 -1.3945 5 1 1.3963 2.6816 0.5884 6 1 3.4880 1.4742 0.8060 7 6 2.0046 -1.1940 0.0005 8 1 1.4648 -2.1293 0.0141 9 6 3.5115 -1.1940 -0.0181 10 1 3.8933 -0.3238 -0.5520 11 6 4.0877 -1.2557 1.4238 12 6 5.4669 -1.9157 1.2157 13 7 5.4128 -2.6564 -0.0581 14 6 5.7294 -4.0041 0.1324 15 6 6.8106 -4.5842 -0.5264 16 7 7.0805 -5.8616 -0.3147 17 6 6.3359 -6.5850 0.4973 18 7 5.3014 -6.0747 1.1349 19 6 4.9689 -4.8037 0.9820 20 6 4.0589 -2.5063 -0.6327 21 1 -0.4850 0.8400 0.0004 22 1 3.4576 -1.8730 2.0640 23 1 4.1985 -0.2545 1.8403 24 1 5.6767 -2.6028 2.0355 25 1 6.2410 -1.1499 1.1667 26 1 7.4221 -3.9987 -1.1970 27 1 6.5804 -7.6266 0.6442 28 1 4.1196 -4.3924 1.5074 29 1 4.1145 -2.4228 -1.7180 30 1 3.4307 -3.3509 -0.3495 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = 55.996647 kcal Electronic energy + Delta-G solvation = -14477.259011 eV Core-core repulsion = 12079.656666 eV Total energy + Delta-G solvation = -2397.602345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.08170 -38.39085 -33.61939 -33.58599 -31.88971 -29.11842 -28.52353 -24.97365 -24.43400 -23.20838 -20.55607 -19.68804 -17.72614 -17.50168 -17.17753 -16.01008 -14.94711 -14.45542 -14.19405 -13.59153 -13.52930 -13.18784 -12.87140 -12.58066 -11.87767 -11.78710 -11.18366 -10.96796 -10.75024 -10.61573 -10.22366 -9.99464 -9.84785 -9.42302 -9.23487 -9.08180 -8.64451 -8.08886 -6.18740 -4.19853 0.92292 1.12995 3.22592 3.31515 3.32370 3.81541 4.03072 4.25668 4.31751 4.33135 4.67714 5.08096 5.10324 5.32595 5.43393 5.61166 5.82659 5.92658 6.03929 6.06707 6.34644 6.41823 6.55375 6.64956 6.90428 6.92994 7.10121 7.19866 7.53192 7.63678 8.11657 8.38806 8.84029 9.43013 10.93837 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.056175 B = 0.007297 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.325106 B = 3836.090706 C = 4026.293027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.045 0.955 11 C -0.146 4.146 12 C 0.044 3.956 13 N -0.497 5.497 14 C 0.005 3.995 15 C 0.159 3.841 16 N -0.518 5.518 17 C 0.272 3.728 18 N -0.514 5.514 19 C 0.119 3.881 20 C 0.056 3.944 21 H 0.266 0.734 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.171 0.829 27 H 0.193 0.807 28 H 0.167 0.833 29 H 0.075 0.925 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.845 -6.036 1.264 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.002 4.002 10 H 0.063 0.937 11 C -0.185 4.185 12 C -0.082 4.082 13 N -0.220 5.220 14 C -0.094 4.094 15 C -0.008 4.008 16 N -0.232 5.232 17 C -0.015 4.015 18 N -0.228 5.228 19 C -0.049 4.049 20 C -0.069 4.069 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.189 0.811 27 H 0.209 0.791 28 H 0.184 0.816 29 H 0.093 0.907 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.265 -6.670 1.056 14.001 hybrid contribution -0.474 1.466 0.460 1.608 sum 11.790 -5.204 1.516 12.976 Atomic orbital electron populations 1.69892 1.06381 1.27245 1.49804 1.25049 0.94706 0.99163 0.93990 0.86848 0.80228 0.83390 0.78897 1.20089 1.21546 1.18741 1.20851 0.88038 0.94624 1.51596 0.90811 1.20226 0.96500 0.92858 0.90643 0.93722 1.23250 0.93444 1.00136 1.01646 1.22956 0.99870 0.97038 0.88301 1.61334 1.30543 1.04780 1.25295 1.20980 0.97386 0.93019 0.98024 1.23259 0.92900 0.90072 0.94526 1.68415 1.30456 1.06970 1.17310 1.24857 0.87272 1.00455 0.88942 1.68317 1.17071 1.13770 1.23665 1.24039 0.97596 0.89343 0.93954 1.23302 0.84017 1.00150 0.99430 0.92454 0.91549 0.91740 0.93684 0.90758 0.81147 0.79068 0.81617 0.90664 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.96 55.43 0.77 -25.62 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.55 26.81 -169.99 -4.56 15.99 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -5.79 6.09 56.52 0.34 -5.45 16 7 C -0.51 -13.52 8.98 -34.44 -0.31 -13.83 16 8 H 0.07 2.12 8.00 -52.49 -0.42 1.70 16 9 C 0.02 0.38 2.38 -89.50 -0.21 0.17 16 10 H 0.04 0.99 6.01 -51.93 -0.31 0.68 16 11 C -0.15 -2.79 6.29 -24.77 -0.16 -2.94 16 12 C 0.04 0.72 6.58 -2.84 -0.02 0.70 16 13 N -0.50 -8.24 5.19 -167.67 -0.87 -9.11 16 14 C 0.00 0.08 4.65 -83.49 -0.39 -0.31 16 15 C 0.16 2.21 11.26 -16.98 -0.19 2.02 16 16 N -0.52 -7.19 10.43 -14.43 -0.15 -7.34 16 17 C 0.27 3.58 12.28 -92.16 -1.13 2.45 16 18 N -0.51 -7.72 10.43 -14.43 -0.15 -7.87 16 19 C 0.12 1.84 9.15 -16.98 -0.16 1.68 16 20 C 0.06 1.06 6.03 -2.30 -0.01 1.05 16 21 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 23 H 0.06 1.23 7.13 -51.93 -0.37 0.86 16 24 H 0.04 0.67 7.04 -51.93 -0.37 0.31 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 27 H 0.19 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.17 2.57 7.84 -52.48 -0.41 2.16 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.05 0.94 6.71 -51.93 -0.35 0.59 16 LS Contribution 251.65 15.07 3.79 3.79 Total: -1.00 -28.85 251.65 -7.36 -36.21 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.53 Total: 1.04 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.67 Total: -7.10 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.40 Total: -49.94 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.56 Total: 15.99 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.85 -7.36 -36.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.209 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds