Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99768 * 2 1 4 4 H 1.48504 * 109.47074 * 264.85470 * 3 2 1 5 5 H 1.48502 * 109.47205 * 24.85047 * 3 2 1 6 6 H 1.48500 * 109.47423 * 144.85128 * 3 2 1 7 7 C 1.37875 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00020 * 359.19459 * 7 2 1 9 9 C 1.50695 * 120.00231 * 179.18076 * 7 2 1 10 10 H 1.08998 * 110.87697 * 329.13548 * 9 7 2 11 11 C 1.55397 * 111.05584 * 92.87182 * 9 7 2 12 12 C 1.54316 * 102.90164 * 153.65298 * 11 9 7 13 13 N 1.47446 * 107.37138 * 337.89323 * 12 11 9 14 14 C 1.39735 * 111.00061 * 236.66627 * 13 12 11 15 15 C 1.39275 * 120.86907 * 239.59358 * 14 13 12 16 16 N 1.32267 * 119.00685 * 179.71745 * 15 14 13 17 17 C 1.31797 * 120.89413 * 0.56536 * 16 15 14 18 18 N 1.31790 * 121.93644 * 359.70776 * 17 16 15 19 19 C 1.32263 * 120.89566 * 359.97438 * 18 17 16 20 20 C 1.47848 * 108.56427 * 358.93276 * 13 12 11 21 21 H 0.96996 * 120.00407 * 359.97438 * 1 2 3 22 22 H 1.08999 * 110.67979 * 35.34458 * 11 9 7 23 23 H 1.09003 * 110.84587 * 272.03365 * 11 9 7 24 24 H 1.09002 * 109.89095 * 218.40783 * 12 11 9 25 25 H 1.09002 * 109.89083 * 97.38407 * 12 11 9 26 26 H 1.07997 * 120.49779 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.02774 * 179.67910 * 17 16 15 28 28 H 1.08007 * 120.48980 * 179.97438 * 19 18 17 29 29 H 1.08993 * 110.37260 * 142.92638 * 20 13 12 30 30 H 1.09005 * 110.36874 * 265.15328 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6053 1.9837 -1.3945 5 1 1.3963 2.6816 0.5884 6 1 3.4880 1.4742 0.8060 7 6 2.0046 -1.1940 0.0005 8 1 1.4648 -2.1293 0.0141 9 6 3.5115 -1.1940 -0.0181 10 1 3.8933 -0.3238 -0.5520 11 6 4.0877 -1.2557 1.4238 12 6 5.4669 -1.9157 1.2157 13 7 5.4128 -2.6564 -0.0581 14 6 5.7294 -4.0041 0.1324 15 6 6.8106 -4.5842 -0.5264 16 7 7.0805 -5.8616 -0.3147 17 6 6.3359 -6.5850 0.4973 18 7 5.3014 -6.0747 1.1349 19 6 4.9689 -4.8037 0.9820 20 6 4.0589 -2.5063 -0.6327 21 1 -0.4850 0.8400 0.0004 22 1 3.4576 -1.8730 2.0640 23 1 4.1985 -0.2545 1.8403 24 1 5.6767 -2.6028 2.0355 25 1 6.2410 -1.1499 1.1667 26 1 7.4221 -3.9987 -1.1970 27 1 6.5804 -7.6266 0.6442 28 1 4.1196 -4.3924 1.5074 29 1 4.1145 -2.4228 -1.7180 30 1 3.4307 -3.3509 -0.3495 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = 36.862408 kcal Electronic energy + Delta-G solvation = -14478.088734 eV Core-core repulsion = 12079.656666 eV Total energy + Delta-G solvation = -2398.432068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23567 -39.77377 -35.32990 -34.73095 -33.60385 -30.61931 -29.92444 -26.68087 -25.61913 -24.52746 -21.90826 -21.40843 -19.32590 -18.61767 -18.60815 -17.46208 -16.38674 -16.09291 -15.70427 -14.83636 -14.71546 -14.55674 -14.40710 -14.24089 -13.48237 -13.26582 -12.88457 -12.46374 -12.20018 -11.90464 -11.81745 -11.71358 -11.61916 -11.15549 -10.70940 -10.58630 -10.28941 -9.39581 -8.29607 -6.34839 -0.20421 0.01132 1.38955 1.39921 1.50892 2.36254 2.70476 2.76748 3.04956 3.18104 3.28319 3.54297 3.82615 4.02591 4.18530 4.28364 4.37534 4.49971 4.69226 4.79363 4.84982 5.01326 5.10419 5.27076 5.36156 5.48985 5.56121 5.76614 5.78153 6.24609 6.29876 6.71329 7.02817 7.31306 8.86730 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.056175 B = 0.007297 C = 0.006953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.325106 B = 3836.090706 C = 4026.293027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.013 3.987 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.236 1.236 7 C -0.513 4.513 8 H 0.031 0.969 9 C 0.010 3.990 10 H 0.048 0.952 11 C -0.141 4.141 12 C 0.052 3.948 13 N -0.486 5.486 14 C -0.013 4.013 15 C 0.170 3.830 16 N -0.523 5.523 17 C 0.278 3.722 18 N -0.531 5.531 19 C 0.112 3.888 20 C 0.065 3.935 21 H 0.266 0.734 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.194 0.806 27 H 0.228 0.772 28 H 0.156 0.844 29 H 0.078 0.922 30 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.762 -5.962 1.282 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.160 1.160 7 C -0.551 4.551 8 H 0.049 0.951 9 C -0.009 4.009 10 H 0.066 0.934 11 C -0.180 4.180 12 C -0.074 4.074 13 N -0.208 5.208 14 C -0.112 4.112 15 C 0.003 3.997 16 N -0.236 5.236 17 C -0.009 4.009 18 N -0.246 5.246 19 C -0.055 4.055 20 C -0.060 4.060 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.113 0.887 26 H 0.211 0.789 27 H 0.244 0.756 28 H 0.174 0.826 29 H 0.096 0.904 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 15.212 -6.621 1.083 16.626 hybrid contribution -1.399 1.267 0.451 1.941 sum 13.813 -5.354 1.534 14.893 Atomic orbital electron populations 1.70053 1.08434 1.28208 1.52239 1.25953 0.95416 1.03241 0.93860 0.85801 0.79634 0.78233 0.79554 1.19302 1.21858 1.15953 1.21101 0.90727 0.92906 1.50387 0.95107 1.20180 0.93425 0.94397 0.92947 0.93429 1.23093 0.94989 1.00621 0.99278 1.22947 0.98245 0.97607 0.88610 1.61312 1.28315 1.05782 1.25440 1.20973 0.98522 0.92421 0.99251 1.23596 0.92195 0.90191 0.93716 1.68544 1.30576 1.06935 1.17582 1.25603 0.86026 1.01763 0.87492 1.68367 1.18086 1.13500 1.24616 1.23960 0.97517 0.89904 0.94125 1.23053 0.85296 0.98142 0.99556 0.92507 0.92766 0.91299 0.92316 0.88660 0.78910 0.75584 0.82628 0.90410 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.89 13.96 21.45 0.30 -57.60 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.94 42.03 26.81 68.60 1.84 43.87 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.24 -9.43 6.09 99.48 0.61 -8.82 16 7 C -0.51 -27.79 8.98 25.60 0.23 -27.56 16 8 H 0.03 1.87 8.00 -2.91 -0.02 1.85 16 9 C 0.01 0.43 2.38 -10.07 -0.02 0.41 16 10 H 0.05 2.02 6.01 -2.39 -0.01 2.01 16 11 C -0.14 -5.17 6.29 31.86 0.20 -4.97 16 12 C 0.05 1.53 6.58 86.64 0.57 2.10 16 13 N -0.49 -15.04 5.19 -684.38 -3.55 -18.59 16 14 C -0.01 -0.36 4.65 38.38 0.18 -0.19 16 15 C 0.17 4.21 11.26 84.88 0.96 5.17 16 16 N -0.52 -12.92 10.43 -199.55 -2.08 -15.00 16 17 C 0.28 6.54 12.28 180.88 2.22 8.76 16 18 N -0.53 -15.06 10.43 -199.56 -2.08 -17.14 16 19 C 0.11 3.36 9.15 84.87 0.78 4.14 16 20 C 0.07 2.44 6.03 86.77 0.52 2.96 16 21 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 22 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 23 H 0.07 2.45 7.13 -2.39 -0.02 2.44 16 24 H 0.06 1.60 7.04 -2.39 -0.02 1.58 16 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.19 3.84 8.06 -2.91 -0.02 3.81 16 27 H 0.23 3.47 8.06 -2.91 -0.02 3.44 16 28 H 0.16 4.87 7.84 -2.91 -0.02 4.84 16 29 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.03 1.34 6.71 -2.38 -0.02 1.32 16 Total: -1.00 -62.93 251.65 1.55 -61.38 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.03 Total: 11.07 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 6.09 Total: -8.00 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -7.41 Total: -108.33 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.84 Total: 43.87 kcal Total: -62.93 1.55 -61.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.243 kcal (2) G-P(sol) polarization free energy of solvation -62.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds