Wall clock time and date at job start Mon Mar 30 2020 03:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34665 * 125.82028 * 2 1 4 4 N 1.37451 * 106.96944 * 179.97438 * 3 2 1 5 5 C 1.38560 * 144.86995 * 180.02562 * 4 3 2 6 6 C 1.32875 * 108.50593 * 179.97438 * 5 4 3 7 7 C 1.50697 * 125.80286 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47025 * 24.99774 * 7 6 5 9 9 C 1.53002 * 109.47015 * 264.99969 * 7 6 5 10 10 C 1.50697 * 109.47420 * 144.99963 * 7 6 5 11 11 H 1.08005 * 119.99908 * 5.61296 * 10 7 6 12 12 C 1.37878 * 120.00145 * 185.61657 * 10 7 6 13 13 N 1.31516 * 120.00300 * 197.52330 * 12 10 7 14 14 Si 1.86798 * 119.99971 * 17.52536 * 12 10 7 15 15 H 1.48505 * 109.47220 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47073 * 60.00302 * 14 12 10 17 17 H 1.48495 * 109.47062 * 300.00194 * 14 12 10 18 18 N 1.38320 * 108.40016 * 0.23977 * 6 5 4 19 19 H 0.97001 * 126.12756 * 179.73169 * 18 6 5 20 20 C 1.36120 * 107.11402 * 359.97438 * 4 3 2 21 21 N 1.31703 * 108.27345 * 0.02562 * 20 4 3 22 22 H 1.08997 * 109.47223 * 90.00508 * 1 2 3 23 23 H 1.09009 * 109.46905 * 210.00450 * 1 2 3 24 24 H 1.09000 * 109.47529 * 330.00025 * 1 2 3 25 25 H 1.07995 * 126.51272 * 359.97248 * 3 2 1 26 26 H 1.08001 * 125.74788 * 359.94964 * 5 4 3 27 27 H 1.09003 * 109.47293 * 186.29064 * 9 7 6 28 28 H 1.09000 * 109.46972 * 306.28463 * 9 7 6 29 29 H 1.08997 * 109.46936 * 66.29075 * 9 7 6 30 30 H 0.97007 * 119.99387 * 354.88834 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2951 1.0919 0.0000 4 7 3.5959 0.6478 0.0006 5 6 4.9259 1.0362 0.0013 6 6 5.6840 -0.0551 0.0021 7 6 7.1907 -0.0818 0.0025 8 1 7.5704 0.8432 0.4364 9 6 7.6988 -0.2174 -1.4343 10 6 7.6721 -1.2540 0.8182 11 1 6.9617 -1.9650 1.2134 12 6 9.0195 -1.4187 1.0599 13 7 9.4784 -2.5850 1.4582 14 14 10.1933 0.0149 0.8218 15 1 11.5762 -0.4185 1.1458 16 1 9.8013 1.1301 1.7206 17 1 10.1353 0.4728 -0.5896 18 7 4.8551 -1.1624 -0.0036 19 1 5.1397 -2.0897 -0.0081 20 6 3.5546 -0.7127 0.0015 21 7 2.2921 -1.0876 0.0009 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.9673 2.1210 -0.0004 26 1 5.2859 2.0545 0.0009 27 1 8.7808 -0.3489 -1.4263 28 1 7.2312 -1.0822 -1.9050 29 1 7.4464 0.6825 -1.9953 30 1 8.8617 -3.3079 1.6533 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261284105.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:06 Heat of formation + Delta-G solvation = 103.858784 kcal Electronic energy + Delta-G solvation = -14368.374100 eV Core-core repulsion = 11972.847213 eV Total energy + Delta-G solvation = -2395.526887 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.80920 -38.24866 -34.41045 -32.70079 -31.68201 -30.35991 -28.07772 -25.93993 -24.86316 -21.90258 -20.99588 -20.63150 -18.89170 -17.64722 -16.72937 -15.77849 -15.63699 -14.51477 -13.79186 -13.57329 -13.22954 -13.16741 -12.71357 -12.64645 -12.37819 -12.05277 -11.72650 -11.16564 -10.99379 -10.64253 -10.51685 -10.15974 -9.86952 -9.55241 -9.15457 -8.43842 -7.71962 -7.21362 -6.67742 -4.33224 2.28258 2.89717 2.93118 3.25237 3.31225 3.42478 3.49852 3.51789 4.31494 4.88774 5.05130 5.11751 5.55569 5.57486 5.73992 5.82327 5.88084 6.00252 6.12266 6.17177 6.40495 6.43669 6.49195 6.80242 6.91331 7.07605 7.20533 7.67509 7.82609 7.87844 8.13254 8.55423 8.62524 9.36984 10.72248 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.061593 B = 0.007029 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.491679 B = 3982.481114 C = 4210.959200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.042 3.958 3 C -0.104 4.104 4 N -0.396 5.396 5 C -0.101 4.101 6 C 0.158 3.842 7 C 0.073 3.927 8 H 0.052 0.948 9 C -0.146 4.146 10 C -0.613 4.613 11 H 0.059 0.941 12 C 0.038 3.962 13 N -0.894 5.894 14 Si 1.045 2.955 15 H -0.283 1.283 16 H -0.280 1.280 17 H -0.271 1.271 18 N -0.570 5.570 19 H 0.438 0.562 20 C 0.381 3.619 21 N -0.522 5.522 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.168 0.832 26 H 0.176 0.824 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 7.881 -3.935 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 C -0.235 4.235 4 N -0.073 5.073 5 C -0.224 4.224 6 C 0.048 3.952 7 C 0.053 3.947 8 H 0.070 0.930 9 C -0.203 4.203 10 C -0.651 4.651 11 H 0.077 0.923 12 C -0.169 4.169 13 N -0.527 5.527 14 Si 0.872 3.128 15 H -0.209 1.209 16 H -0.206 1.206 17 H -0.197 1.197 18 N -0.189 5.189 19 H 0.280 0.720 20 C 0.031 3.969 21 N -0.253 5.253 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.185 0.815 26 H 0.193 0.807 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.764 7.605 -3.885 11.541 hybrid contribution -1.206 -0.032 0.085 1.209 sum -8.970 7.573 -3.800 12.339 Atomic orbital electron populations 1.19967 0.87479 1.02396 1.01942 1.20500 0.95861 0.87355 1.05212 1.21581 0.79490 0.99960 1.22507 1.43505 1.05344 1.08938 1.49494 1.21124 0.78505 0.99872 1.22855 1.21045 0.95046 0.82383 0.96689 1.17961 0.81843 0.99877 0.95038 0.93038 1.22232 1.02007 0.99316 0.96782 1.21796 0.94963 1.10524 1.37785 0.92308 1.25797 0.97093 1.00387 0.93650 1.70870 1.38069 1.01621 1.42119 0.84042 0.76321 0.75140 0.77293 1.20901 1.20649 1.19725 1.41326 0.99557 1.10012 1.67957 0.71993 1.20540 0.88259 0.80996 1.07094 1.70147 0.94958 1.29448 1.30724 0.91559 0.91292 0.91387 0.81504 0.80705 0.91671 0.93613 0.95060 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.42 36.00 0.38 -0.35 16 2 C 0.04 0.72 7.08 -82.85 -0.59 0.14 16 3 C -0.10 -1.74 11.94 -16.30 -0.19 -1.93 16 4 N -0.40 -7.60 3.53 -63.97 -0.23 -7.83 16 5 C -0.10 -1.86 11.79 -16.36 -0.19 -2.05 16 6 C 0.16 3.18 5.82 -81.51 -0.47 2.71 16 7 C 0.07 1.55 2.25 -92.93 -0.21 1.34 16 8 H 0.05 1.06 6.79 -51.93 -0.35 0.70 16 9 C -0.15 -2.85 8.85 37.16 0.33 -2.52 16 10 C -0.61 -15.49 8.65 -34.44 -0.30 -15.79 16 11 H 0.06 1.59 7.20 -52.48 -0.38 1.22 16 12 C 0.04 0.99 5.29 -17.82 -0.09 0.90 16 13 N -0.89 -25.61 13.70 55.43 0.76 -24.85 16 14 Si 1.04 22.79 26.29 -169.99 -4.47 18.32 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 17 H -0.27 -5.34 5.76 56.52 0.33 -5.01 16 18 N -0.57 -11.54 5.88 -9.70 -0.06 -11.59 16 19 H 0.44 8.53 8.32 -40.82 -0.34 8.19 16 20 C 0.38 7.91 9.64 -320.13 -3.08 4.83 16 21 N -0.52 -10.65 11.30 -10.22 -0.12 -10.77 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 26 H 0.18 2.64 8.06 -52.49 -0.42 2.22 16 27 H 0.06 1.32 4.88 -51.93 -0.25 1.06 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.27 7.73 8.73 -40.82 -0.36 7.37 16 LS Contribution 255.15 15.07 3.85 3.85 Total: -1.00 -29.80 255.15 -8.21 -38.00 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.51 Total: 7.61 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -4.43 Total: -12.74 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.36 Total: -55.04 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.47 Total: 18.32 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.80 -8.21 -38.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284105.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.862 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds