Wall clock time and date at job start Mon Mar 30 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20760 * 120.00076 * 2 1 4 4 C 1.50694 * 119.99819 * 179.97438 * 2 1 3 5 5 C 1.50706 * 109.46892 * 180.02562 * 4 2 1 6 6 C 1.38894 * 119.68877 * 89.99797 * 5 4 2 7 7 C 1.36448 * 120.59899 * 180.02562 * 6 5 4 8 8 C 1.40731 * 119.94964 * 359.97438 * 7 6 5 9 9 C 1.41037 * 120.30643 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00282 * 154.48301 * 9 8 7 11 11 C 1.39924 * 120.00159 * 334.48429 * 9 8 7 12 12 N 1.30879 * 120.00260 * 334.57157 * 11 9 8 13 13 Si 1.86807 * 120.00178 * 154.57142 * 11 9 8 14 14 H 1.48498 * 109.47206 * 179.97438 * 13 11 9 15 15 H 1.48504 * 109.47036 * 299.99916 * 13 11 9 16 16 H 1.48503 * 109.47006 * 59.99921 * 13 11 9 17 17 C 1.41549 * 119.38505 * 0.27004 * 8 7 6 18 18 N 1.38725 * 120.29185 * 179.72894 * 17 8 7 19 19 C 1.38167 * 119.68230 * 270.01737 * 5 4 2 20 20 H 1.08996 * 109.47138 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47483 * 300.00671 * 1 2 3 22 22 H 1.09005 * 109.47118 * 59.99929 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00200 * 4 2 1 24 24 H 1.09008 * 109.47132 * 299.99853 * 4 2 1 25 25 H 1.08005 * 119.70337 * 0.02562 * 6 5 4 26 26 H 1.07995 * 120.02748 * 179.97438 * 7 6 5 27 27 H 0.97007 * 119.99667 * 354.16152 * 12 11 9 28 28 H 0.97001 * 120.00249 * 359.97438 * 18 17 8 29 29 H 0.96999 * 120.00451 * 180.02562 * 18 17 8 30 30 H 1.08001 * 119.98708 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7421 -1.0297 0.0011 6 6 4.4180 -0.9037 1.2079 7 6 5.7592 -0.6538 1.2301 8 6 6.4694 -0.5222 0.0223 9 6 7.8560 -0.2645 0.0364 10 1 8.4689 -0.5607 -0.8021 11 6 8.4376 0.3749 1.1367 12 7 7.7151 1.1601 1.8945 13 14 10.2454 0.1077 1.5242 14 1 10.6143 0.8918 2.7301 15 1 10.4894 -1.3351 1.7774 16 1 11.0697 0.5546 0.3726 17 6 5.7783 -0.6457 -1.2068 18 7 6.4587 -0.5138 -2.4085 19 6 4.4152 -0.9046 -1.1990 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 1.9972 -1.8770 -0.8891 24 1 1.9971 -1.8763 0.8909 25 1 3.8770 -1.0043 2.1373 26 1 6.2754 -0.5571 2.1737 27 1 6.8003 1.3663 1.6464 28 1 7.4122 -0.3357 -2.4090 29 1 5.9809 -0.5988 -3.2484 30 1 3.8794 -1.0046 -2.1314 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306942317.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:18 Heat of formation + Delta-G solvation = -33.765345 kcal Electronic energy + Delta-G solvation = -14278.412617 eV Core-core repulsion = 11844.625149 eV Total energy + Delta-G solvation = -2433.787468 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.08495 -37.73109 -34.02394 -33.46775 -31.13784 -29.64055 -27.51534 -27.19623 -23.89658 -20.93553 -20.34146 -18.97185 -17.69190 -15.88082 -15.48334 -15.23683 -14.74807 -14.45271 -14.10711 -13.86940 -13.13768 -12.47163 -12.35273 -12.23070 -11.94257 -11.81676 -11.51337 -11.02512 -10.99085 -10.52776 -10.34150 -9.76260 -9.48290 -9.34150 -8.98980 -8.83172 -7.39274 -7.09488 -6.37494 -4.10991 2.46548 2.81200 3.15468 3.21670 3.31614 3.42298 4.12758 4.49153 4.80677 5.20059 5.25989 5.44525 5.59954 5.64829 5.83493 5.83748 6.16643 6.26035 6.36820 6.52379 6.96495 7.17419 7.44436 7.58824 7.67641 7.94906 8.05100 8.07799 8.25188 8.37449 8.61302 8.91463 9.10610 9.12723 10.23824 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044333 B = 0.007662 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.433822 B = 3653.392716 C = 3980.650274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.343 3.657 3 O -0.443 6.443 4 C -0.106 4.106 5 C -0.170 4.170 6 C -0.111 4.111 7 C -0.197 4.197 8 C 0.058 3.942 9 C -0.530 4.530 10 H 0.068 0.932 11 C 0.038 3.962 12 N -0.806 5.806 13 Si 1.063 2.937 14 H -0.276 1.276 15 H -0.277 1.277 16 H -0.279 1.279 17 C 0.114 3.886 18 N -0.884 5.884 19 C -0.158 4.158 20 H 0.076 0.924 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.299 0.701 28 H 0.391 0.609 29 H 0.376 0.624 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 -4.192 -3.308 9.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.217 3.783 3 O -0.315 6.315 4 C -0.143 4.143 5 C -0.172 4.172 6 C -0.131 4.131 7 C -0.218 4.218 8 C 0.053 3.947 9 C -0.559 4.559 10 H 0.087 0.913 11 C -0.182 4.182 12 N -0.430 5.430 13 Si 0.888 3.112 14 H -0.201 1.201 15 H -0.203 1.203 16 H -0.205 1.205 17 C 0.013 3.987 18 N -0.425 5.425 19 C -0.182 4.182 20 H 0.095 0.905 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.220 0.780 29 H 0.202 0.798 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.984 -3.217 -2.093 7.109 hybrid contribution -1.249 -0.403 -1.468 1.969 sum -7.233 -3.619 -3.561 8.837 Atomic orbital electron populations 1.22303 0.95922 1.03871 1.04024 1.24867 0.90873 0.91435 0.71138 1.90428 1.71806 1.35063 1.34192 1.20838 0.94721 0.95900 1.02839 1.18323 0.91952 1.13783 0.93153 1.19967 0.94715 1.03423 0.94976 1.20577 0.93857 1.10108 0.97270 1.17323 0.93314 0.94434 0.89616 1.20119 0.93115 1.36934 1.05732 0.91350 1.26832 1.07214 0.91899 0.92283 1.70441 1.12894 1.23003 1.36682 0.83669 0.73041 0.77369 0.77129 1.20069 1.20262 1.20490 1.17811 0.90626 1.03671 0.86585 1.41845 1.11053 1.85427 1.04217 1.19755 0.92603 1.10111 0.95721 0.90480 0.89720 0.89808 0.89574 0.89401 0.89955 0.87784 0.88696 0.78032 0.79832 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 10.33 36.01 0.37 -1.89 16 2 C 0.34 5.70 7.26 -29.04 -0.21 5.49 16 3 O -0.44 -9.67 16.77 6.00 0.10 -9.57 16 4 C -0.11 -1.75 5.66 -29.04 -0.16 -1.92 16 5 C -0.17 -3.79 4.39 -104.40 -0.46 -4.24 16 6 C -0.11 -2.68 9.61 -39.98 -0.38 -3.06 16 7 C -0.20 -5.28 7.89 -39.29 -0.31 -5.59 16 8 C 0.06 1.58 5.31 -106.63 -0.57 1.01 16 9 C -0.53 -14.25 8.43 -37.89 -0.32 -14.57 16 10 H 0.07 1.76 6.77 -52.49 -0.36 1.40 16 11 C 0.04 1.01 4.94 -17.33 -0.09 0.92 16 12 N -0.81 -22.47 12.32 55.55 0.68 -21.79 16 13 Si 1.06 22.30 30.00 -169.99 -5.10 17.20 16 14 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 16 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 17 C 0.11 2.83 6.79 -83.29 -0.57 2.26 16 18 N -0.88 -18.48 8.98 32.72 0.29 -18.19 16 19 C -0.16 -3.64 9.52 -39.42 -0.38 -4.02 16 20 H 0.08 0.65 8.00 -51.93 -0.42 0.24 16 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 24 H 0.09 1.26 8.08 -51.92 -0.42 0.84 16 25 H 0.08 1.81 8.06 -52.48 -0.42 1.38 16 26 H 0.10 2.88 6.49 -52.49 -0.34 2.54 16 27 H 0.30 8.72 6.69 -40.82 -0.27 8.45 16 28 H 0.39 8.05 7.06 -40.82 -0.29 7.76 16 29 H 0.38 6.63 8.84 -40.82 -0.36 6.27 16 30 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 261.93 15.07 3.95 3.95 Total: -1.00 -31.37 261.93 -6.50 -37.87 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -3.36 Total: 16.15 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -3.07 Total: -25.62 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.98 Total: -39.97 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.10 Total: -9.57 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.10 Total: 17.20 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.37 -6.50 -37.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942317.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.101 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds