Wall clock time and date at job start Mon Mar 30 2020 02:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20760 * 120.00076 * 2 1 4 4 C 1.50694 * 119.99819 * 179.97438 * 2 1 3 5 5 C 1.50706 * 109.46892 * 180.02562 * 4 2 1 6 6 C 1.38894 * 119.68877 * 89.99797 * 5 4 2 7 7 C 1.36448 * 120.59899 * 180.02562 * 6 5 4 8 8 C 1.40731 * 119.94964 * 359.97438 * 7 6 5 9 9 C 1.41037 * 120.30643 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00282 * 154.48301 * 9 8 7 11 11 C 1.39924 * 120.00159 * 334.48429 * 9 8 7 12 12 N 1.30879 * 120.00260 * 334.57157 * 11 9 8 13 13 Si 1.86807 * 120.00178 * 154.57142 * 11 9 8 14 14 H 1.48498 * 109.47206 * 179.97438 * 13 11 9 15 15 H 1.48504 * 109.47036 * 299.99916 * 13 11 9 16 16 H 1.48503 * 109.47006 * 59.99921 * 13 11 9 17 17 C 1.41549 * 119.38505 * 0.27004 * 8 7 6 18 18 N 1.38725 * 120.29185 * 179.72894 * 17 8 7 19 19 C 1.38167 * 119.68230 * 270.01737 * 5 4 2 20 20 H 1.08996 * 109.47138 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47483 * 300.00671 * 1 2 3 22 22 H 1.09005 * 109.47118 * 59.99929 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00200 * 4 2 1 24 24 H 1.09008 * 109.47132 * 299.99853 * 4 2 1 25 25 H 1.08005 * 119.70337 * 0.02562 * 6 5 4 26 26 H 1.07995 * 120.02748 * 179.97438 * 7 6 5 27 27 H 0.97007 * 119.99667 * 354.16152 * 12 11 9 28 28 H 0.97001 * 120.00249 * 359.97438 * 18 17 8 29 29 H 0.96999 * 120.00451 * 180.02562 * 18 17 8 30 30 H 1.08001 * 119.98708 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 0.0006 5 6 3.7421 -1.0297 0.0011 6 6 4.4180 -0.9037 1.2079 7 6 5.7592 -0.6538 1.2301 8 6 6.4694 -0.5222 0.0223 9 6 7.8560 -0.2645 0.0364 10 1 8.4689 -0.5607 -0.8021 11 6 8.4376 0.3749 1.1367 12 7 7.7151 1.1601 1.8945 13 14 10.2454 0.1077 1.5242 14 1 10.6143 0.8918 2.7301 15 1 10.4894 -1.3351 1.7774 16 1 11.0697 0.5546 0.3726 17 6 5.7783 -0.6457 -1.2068 18 7 6.4587 -0.5138 -2.4085 19 6 4.4152 -0.9046 -1.1990 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 1.9972 -1.8770 -0.8891 24 1 1.9971 -1.8763 0.8909 25 1 3.8770 -1.0043 2.1373 26 1 6.2754 -0.5571 2.1737 27 1 6.8003 1.3663 1.6464 28 1 7.4122 -0.3357 -2.4090 29 1 5.9809 -0.5988 -3.2484 30 1 3.8794 -1.0046 -2.1314 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306942317.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:17 Heat of formation + Delta-G solvation = -54.578719 kcal Electronic energy + Delta-G solvation = -14279.315153 eV Core-core repulsion = 11844.625149 eV Total energy + Delta-G solvation = -2434.690003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61134 -39.49997 -35.89244 -35.27727 -32.68431 -31.07713 -29.37375 -28.78748 -25.70377 -22.83531 -22.11306 -20.35235 -19.63650 -17.65290 -17.16438 -16.55488 -16.34300 -16.08815 -15.69865 -15.40424 -14.90118 -14.25441 -14.17795 -13.61802 -13.48978 -13.06791 -12.96227 -12.69286 -12.50745 -12.26524 -11.96552 -11.64380 -11.28524 -11.14529 -10.78273 -10.45465 -9.30609 -9.12841 -8.24847 -6.12584 0.94458 1.18867 1.20845 1.50652 1.64489 1.79445 2.38810 2.74321 3.39184 3.50348 3.74989 4.12487 4.32814 4.41965 4.56610 4.63963 4.77516 4.88227 4.88530 5.02871 5.24225 5.27734 5.50579 5.67577 5.76069 5.89120 6.14524 6.29250 6.48194 6.69236 6.80875 7.01000 7.20196 7.42557 8.17524 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.044333 B = 0.007662 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.433822 B = 3653.392716 C = 3980.650274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.347 3.653 3 O -0.509 6.509 4 C -0.112 4.112 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.213 4.213 8 C 0.015 3.985 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.003 4.003 12 N -0.837 5.837 13 Si 1.118 2.882 14 H -0.278 1.278 15 H -0.266 1.266 16 H -0.257 1.257 17 C 0.108 3.892 18 N -0.872 5.872 19 C -0.173 4.173 20 H 0.113 0.887 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.123 0.877 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.277 0.723 28 H 0.393 0.607 29 H 0.394 0.606 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -5.553 -4.503 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.225 3.775 3 O -0.386 6.386 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.234 4.234 8 C 0.010 3.990 9 C -0.589 4.589 10 H 0.090 0.910 11 C -0.217 4.217 12 N -0.462 5.462 13 Si 0.936 3.064 14 H -0.203 1.203 15 H -0.191 1.191 16 H -0.182 1.182 17 C 0.005 3.995 18 N -0.415 5.415 19 C -0.197 4.197 20 H 0.131 0.869 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.141 0.859 24 H 0.136 0.864 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.221 0.779 29 H 0.223 0.777 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.843 -4.607 -3.337 9.689 hybrid contribution -0.921 -0.077 -1.194 1.510 sum -8.764 -4.685 -4.531 10.922 Atomic orbital electron populations 1.22260 0.90909 1.06677 1.05012 1.25489 0.93531 0.89972 0.68470 1.90442 1.73553 1.36969 1.37620 1.21072 0.90539 0.97182 1.06083 1.19005 0.95238 1.09075 0.91931 1.20248 0.94059 1.04495 0.96871 1.20596 0.95209 1.11048 0.96515 1.17658 0.94114 0.96438 0.90782 1.20299 0.93562 1.38312 1.06728 0.90989 1.28314 1.10895 0.90570 0.91874 1.70578 1.12022 1.25581 1.38012 0.82996 0.68157 0.77747 0.77503 1.20264 1.19108 1.18162 1.18105 0.91661 1.02739 0.87016 1.41761 1.11184 1.84527 1.03986 1.20208 0.92197 1.09869 0.97458 0.86852 0.88769 0.88520 0.85908 0.86427 0.88352 0.90222 0.91139 0.77900 0.77730 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 10.33 71.24 0.74 -2.62 16 2 C 0.35 10.43 7.26 29.10 0.21 10.65 16 3 O -0.51 -21.78 16.77 -1.45 -0.02 -21.80 16 4 C -0.11 -3.26 5.66 29.10 0.16 -3.10 16 5 C -0.15 -6.46 4.39 -19.72 -0.09 -6.55 16 6 C -0.14 -6.67 9.61 22.01 0.21 -6.46 16 7 C -0.21 -11.90 7.89 22.46 0.18 -11.72 16 8 C 0.01 0.84 5.31 -21.17 -0.11 0.73 16 9 C -0.56 -31.15 8.43 23.37 0.20 -30.95 16 10 H 0.07 3.79 6.77 -2.91 -0.02 3.77 16 11 C 0.00 -0.18 4.94 85.24 0.42 0.24 16 12 N -0.84 -49.19 12.32 21.83 0.27 -48.93 16 13 Si 1.12 45.89 30.00 68.60 2.06 47.95 16 14 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 17 C 0.11 5.32 6.79 38.99 0.26 5.58 16 18 N -0.87 -35.83 8.98 -50.40 -0.45 -36.29 16 19 C -0.17 -7.72 9.52 22.37 0.21 -7.51 16 20 H 0.11 1.19 8.00 -2.39 -0.02 1.17 16 21 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 22 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.12 2.77 8.08 -2.39 -0.02 2.75 16 24 H 0.12 2.81 8.08 -2.38 -0.02 2.80 16 25 H 0.10 4.33 8.06 -2.91 -0.02 4.30 16 26 H 0.08 4.72 6.49 -2.91 -0.02 4.70 16 27 H 0.28 17.27 6.69 -92.70 -0.62 16.65 16 28 H 0.39 16.08 7.06 -92.71 -0.65 15.42 16 29 H 0.39 13.18 8.84 -92.71 -0.82 12.36 16 30 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -72.68 261.93 4.09 -68.59 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.16 Total: 42.17 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 2.40 Total: -51.70 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -0.18 Total: -85.21 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.02 Total: -21.80 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.06 Total: 47.95 kcal Total: -72.68 4.09 -68.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942317.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.013 kcal (2) G-P(sol) polarization free energy of solvation -72.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds