Wall clock time and date at job start Mon Mar 30 2020 02:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20759 * 120.00314 * 2 1 4 4 C 1.50705 * 119.99847 * 180.02562 * 2 1 3 5 5 C 1.50697 * 109.47205 * 179.97438 * 4 2 1 6 6 C 1.38201 * 119.98877 * 264.98100 * 5 4 2 7 7 C 1.38865 * 120.62741 * 180.02562 * 6 5 4 8 8 C 1.36479 * 120.59416 * 359.73344 * 7 6 5 9 9 C 1.40697 * 119.95455 * 0.51642 * 8 7 6 10 10 C 1.41046 * 120.30622 * 179.76339 * 9 8 7 11 11 H 1.08002 * 119.99927 * 154.26064 * 10 9 8 12 12 C 1.39923 * 120.00236 * 333.97874 * 10 9 8 13 13 N 1.30876 * 120.00207 * 343.14988 * 12 10 9 14 14 Si 1.86803 * 119.99949 * 163.14528 * 12 10 9 15 15 H 1.48495 * 109.46886 * 60.00305 * 14 12 10 16 16 H 1.48497 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46959 * 300.00247 * 14 12 10 18 18 C 1.38715 * 119.98417 * 84.99448 * 5 4 2 19 19 N 1.38739 * 120.29715 * 359.96215 * 18 5 4 20 20 H 1.08999 * 109.47369 * 239.99962 * 1 2 3 21 21 H 1.09004 * 109.47226 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47279 * 119.99590 * 1 2 3 23 23 H 1.08995 * 109.46784 * 60.00011 * 4 2 1 24 24 H 1.09002 * 109.46764 * 299.99853 * 4 2 1 25 25 H 1.07998 * 119.68802 * 0.03968 * 6 5 4 26 26 H 1.08001 * 119.69891 * 180.02562 * 7 6 5 27 27 H 1.08000 * 120.02240 * 180.26085 * 8 7 6 28 28 H 0.97003 * 120.00337 * 179.97438 * 13 12 10 29 29 H 0.96999 * 120.00055 * 180.02562 * 19 18 5 30 30 H 0.97005 * 119.99594 * 0.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7421 -1.0299 -0.0011 6 6 4.4399 -1.0064 -1.1938 7 6 5.8054 -0.7545 -1.2096 8 6 6.4821 -0.5203 -0.0477 9 6 5.7972 -0.5436 1.1810 10 6 6.4901 -0.3075 2.3867 11 1 5.9629 0.0820 3.2451 12 6 7.8592 -0.5833 2.4724 13 7 8.4292 -1.3513 1.5791 14 14 8.8735 0.1448 3.8619 15 1 8.3320 -0.3178 5.1649 16 1 10.2853 -0.2955 3.7275 17 1 8.8094 1.6271 3.7974 18 6 4.4050 -0.8004 1.1956 19 7 3.7099 -0.8222 2.3961 20 1 -0.3634 -0.5138 0.8900 21 1 -0.3634 1.0277 -0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 1.9971 -1.8763 -0.8908 24 1 1.9971 -1.8771 0.8892 25 1 3.9182 -1.1853 -2.1223 26 1 6.3358 -0.7393 -2.1503 27 1 7.5433 -0.3213 -0.0712 28 1 9.3784 -1.5423 1.6382 29 1 4.1777 -0.6608 3.2304 30 1 2.7561 -0.9988 2.4011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307055886.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:23 Heat of formation + Delta-G solvation = -25.334150 kcal Electronic energy + Delta-G solvation = -14443.545245 eV Core-core repulsion = 12010.123381 eV Total energy + Delta-G solvation = -2433.421864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19101 -37.52884 -33.77623 -33.09542 -31.52168 -29.81454 -28.07808 -25.73196 -24.95198 -20.74599 -20.15547 -18.94777 -16.83714 -16.08882 -15.71303 -15.29090 -14.71202 -14.62737 -14.49776 -13.46080 -12.70782 -12.54631 -12.32240 -12.07764 -12.01235 -11.59434 -11.48683 -11.23636 -10.95333 -10.67353 -10.37809 -9.60763 -9.41140 -9.22665 -9.14016 -8.98412 -7.18951 -6.63480 -6.20208 -4.04435 2.44731 2.89260 3.13959 3.16061 3.20184 3.36529 4.04927 4.52998 4.83876 5.22698 5.27244 5.42421 5.53202 5.76192 5.77618 5.86667 6.16854 6.32674 6.51517 6.72554 7.07524 7.31112 7.39113 7.61447 7.80258 7.96813 8.03307 8.27374 8.33240 8.59742 8.88318 8.92900 9.15015 9.23795 10.39254 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.008337 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.520236 B = 3357.882490 C = 3752.851131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.342 3.658 3 O -0.437 6.437 4 C -0.112 4.112 5 C -0.145 4.145 6 C -0.182 4.182 7 C -0.147 4.147 8 C -0.137 4.137 9 C 0.064 3.936 10 C -0.467 4.467 11 H 0.070 0.930 12 C 0.076 3.924 13 N -0.805 5.805 14 Si 0.903 3.097 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.267 1.267 18 C 0.136 3.864 19 N -0.882 5.882 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.277 0.723 29 H 0.391 0.609 30 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.684 -0.998 -0.307 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.215 3.785 3 O -0.308 6.308 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.202 4.202 7 C -0.167 4.167 8 C -0.157 4.157 9 C 0.059 3.941 10 C -0.498 4.498 11 H 0.088 0.912 12 C -0.140 4.140 13 N -0.432 5.432 14 Si 0.728 3.272 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.191 1.191 18 C 0.034 3.966 19 N -0.424 5.424 20 H 0.104 0.896 21 H 0.093 0.907 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.087 0.913 29 H 0.220 0.780 30 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.067 -0.537 -0.419 9.092 hybrid contribution 0.277 0.093 0.890 0.937 sum -8.790 -0.445 0.471 8.814 Atomic orbital electron populations 1.22360 0.95751 1.04185 1.03907 1.24764 0.90913 0.91257 0.71528 1.90432 1.71857 1.34861 1.33655 1.20796 0.94936 0.96178 1.03045 1.18294 0.91695 1.12146 0.92936 1.19942 0.94279 1.11350 0.94647 1.20214 0.93954 1.05505 0.96986 1.20775 0.99819 1.04294 0.90859 1.17183 0.88716 0.94356 0.93850 1.19078 0.93227 1.39570 0.97903 0.91229 1.25734 0.98321 0.93077 0.96820 1.69836 1.12495 1.27151 1.33700 0.86468 0.78627 0.80503 0.81581 1.19388 1.20558 1.19138 1.17688 0.92327 1.01783 0.84768 1.41893 1.09141 1.84711 1.06614 0.89566 0.90664 0.89560 0.89145 0.89626 0.89914 0.89846 0.86667 0.91263 0.77990 0.80212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 10.26 36.00 0.37 -1.83 16 2 C 0.34 5.53 7.26 -29.03 -0.21 5.32 16 3 O -0.44 -9.27 16.76 6.00 0.10 -9.17 16 4 C -0.11 -1.85 5.20 -29.03 -0.15 -2.01 16 5 C -0.15 -3.26 4.39 -104.46 -0.46 -3.72 16 6 C -0.18 -4.24 9.67 -39.36 -0.38 -4.62 16 7 C -0.15 -3.66 9.96 -39.98 -0.40 -4.06 16 8 C -0.14 -3.73 8.63 -39.29 -0.34 -4.07 16 9 C 0.06 1.74 5.57 -106.63 -0.59 1.14 16 10 C -0.47 -12.58 8.50 -37.89 -0.32 -12.90 16 11 H 0.07 1.78 6.70 -52.49 -0.35 1.43 16 12 C 0.08 1.97 5.15 -17.33 -0.09 1.88 16 13 N -0.80 -21.58 11.00 55.55 0.61 -20.97 16 14 Si 0.90 19.38 29.59 -169.99 -5.03 14.35 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 C 0.14 3.32 6.77 -83.29 -0.56 2.75 16 19 N -0.88 -18.03 8.88 32.72 0.29 -17.74 16 20 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.07 0.82 8.12 -51.93 -0.42 0.39 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 24 H 0.09 1.24 6.82 -51.93 -0.35 0.89 16 25 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.08 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.12 3.25 6.23 -52.49 -0.33 2.92 16 28 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 29 H 0.39 7.91 7.06 -40.82 -0.29 7.62 16 30 H 0.37 6.37 6.94 -40.82 -0.28 6.08 16 LS Contribution 259.52 15.07 3.91 3.91 Total: -1.00 -31.21 259.52 -6.52 -37.74 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -3.27 Total: 13.98 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.14 Total: -22.10 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.90 Total: -38.71 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.10 Total: -9.17 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.21 -6.52 -37.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307055886.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.404 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds