Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20759 * 120.00314 * 2 1 4 4 C 1.50705 * 119.99847 * 180.02562 * 2 1 3 5 5 C 1.50697 * 109.47205 * 179.97438 * 4 2 1 6 6 C 1.38201 * 119.98877 * 264.98100 * 5 4 2 7 7 C 1.38865 * 120.62741 * 180.02562 * 6 5 4 8 8 C 1.36479 * 120.59416 * 359.73344 * 7 6 5 9 9 C 1.40697 * 119.95455 * 0.51642 * 8 7 6 10 10 C 1.41046 * 120.30622 * 179.76339 * 9 8 7 11 11 H 1.08002 * 119.99927 * 154.26064 * 10 9 8 12 12 C 1.39923 * 120.00236 * 333.97874 * 10 9 8 13 13 N 1.30876 * 120.00207 * 343.14988 * 12 10 9 14 14 Si 1.86803 * 119.99949 * 163.14528 * 12 10 9 15 15 H 1.48495 * 109.46886 * 60.00305 * 14 12 10 16 16 H 1.48497 * 109.47040 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46959 * 300.00247 * 14 12 10 18 18 C 1.38715 * 119.98417 * 84.99448 * 5 4 2 19 19 N 1.38739 * 120.29715 * 359.96215 * 18 5 4 20 20 H 1.08999 * 109.47369 * 239.99962 * 1 2 3 21 21 H 1.09004 * 109.47226 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47279 * 119.99590 * 1 2 3 23 23 H 1.08995 * 109.46784 * 60.00011 * 4 2 1 24 24 H 1.09002 * 109.46764 * 299.99853 * 4 2 1 25 25 H 1.07998 * 119.68802 * 0.03968 * 6 5 4 26 26 H 1.08001 * 119.69891 * 180.02562 * 7 6 5 27 27 H 1.08000 * 120.02240 * 180.26085 * 8 7 6 28 28 H 0.97003 * 120.00337 * 179.97438 * 13 12 10 29 29 H 0.96999 * 120.00055 * 180.02562 * 19 18 5 30 30 H 0.97005 * 119.99594 * 0.02562 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7421 -1.0299 -0.0011 6 6 4.4399 -1.0064 -1.1938 7 6 5.8054 -0.7545 -1.2096 8 6 6.4821 -0.5203 -0.0477 9 6 5.7972 -0.5436 1.1810 10 6 6.4901 -0.3075 2.3867 11 1 5.9629 0.0820 3.2451 12 6 7.8592 -0.5833 2.4724 13 7 8.4292 -1.3513 1.5791 14 14 8.8735 0.1448 3.8619 15 1 8.3320 -0.3178 5.1649 16 1 10.2853 -0.2955 3.7275 17 1 8.8094 1.6271 3.7974 18 6 4.4050 -0.8004 1.1956 19 7 3.7099 -0.8222 2.3961 20 1 -0.3634 -0.5138 0.8900 21 1 -0.3634 1.0277 -0.0005 22 1 -0.3634 -0.5138 -0.8900 23 1 1.9971 -1.8763 -0.8908 24 1 1.9971 -1.8771 0.8892 25 1 3.9182 -1.1853 -2.1223 26 1 6.3358 -0.7393 -2.1503 27 1 7.5433 -0.3213 -0.0712 28 1 9.3784 -1.5423 1.6382 29 1 4.1777 -0.6608 3.2304 30 1 2.7561 -0.9988 2.4011 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307055886.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -45.812097 kcal Electronic energy + Delta-G solvation = -14444.433235 eV Core-core repulsion = 12010.123381 eV Total energy + Delta-G solvation = -2434.309854 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67100 -39.24222 -35.64734 -34.90650 -33.08801 -31.13666 -29.81265 -27.28112 -26.89497 -22.56759 -21.92794 -20.35002 -18.71937 -17.79178 -17.52950 -16.56065 -16.50914 -16.04179 -15.85248 -15.11792 -14.43670 -14.36653 -13.87925 -13.53590 -13.22730 -13.16033 -12.90623 -12.83000 -12.64520 -12.35984 -12.13908 -11.43089 -11.29674 -11.02546 -10.95117 -10.47768 -9.11199 -8.55820 -8.03098 -6.04095 1.05759 1.22961 1.34636 1.38103 1.48705 1.55818 2.24914 2.82883 3.42798 3.58246 3.91419 4.13787 4.37965 4.42454 4.70451 4.78387 4.82021 4.85573 4.93397 5.13542 5.30167 5.37792 5.51801 5.76551 5.93185 6.04173 6.30861 6.42505 6.68950 6.83387 6.95317 7.03481 7.30686 7.51163 8.48827 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.008337 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.520236 B = 3357.882490 C = 3752.851131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.347 3.653 3 O -0.500 6.500 4 C -0.115 4.115 5 C -0.151 4.151 6 C -0.184 4.184 7 C -0.167 4.167 8 C -0.167 4.167 9 C 0.023 3.977 10 C -0.497 4.497 11 H 0.073 0.927 12 C 0.031 3.969 13 N -0.840 5.840 14 Si 0.976 3.024 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.268 1.268 18 C 0.125 3.875 19 N -0.870 5.870 20 H 0.117 0.883 21 H 0.072 0.928 22 H 0.117 0.883 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.281 0.719 29 H 0.392 0.608 30 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.110 -1.606 0.108 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.225 3.775 3 O -0.376 6.376 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.203 4.203 7 C -0.186 4.186 8 C -0.188 4.188 9 C 0.018 3.982 10 C -0.528 4.528 11 H 0.091 0.909 12 C -0.181 4.181 13 N -0.468 5.468 14 Si 0.798 3.202 15 H -0.181 1.181 16 H -0.197 1.197 17 H -0.193 1.193 18 C 0.022 3.978 19 N -0.412 5.412 20 H 0.135 0.865 21 H 0.091 0.909 22 H 0.135 0.865 23 H 0.141 0.859 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.221 0.779 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.546 -1.172 0.001 11.605 hybrid contribution 0.908 0.225 0.666 1.148 sum -10.638 -0.947 0.667 10.701 Atomic orbital electron populations 1.22321 0.90807 1.05083 1.06756 1.25356 0.93446 0.89731 0.68979 1.90443 1.73534 1.36622 1.36992 1.20981 0.90812 0.97543 1.05913 1.18897 0.95115 1.09865 0.91745 1.20400 0.93721 1.09705 0.96492 1.20465 0.95263 1.06063 0.96848 1.20742 0.99116 1.06656 0.92267 1.17582 0.90668 0.95853 0.94059 1.19348 0.94407 1.40891 0.98181 0.90874 1.26597 0.99115 0.92953 0.99449 1.69924 1.12937 1.28325 1.35641 0.85348 0.77094 0.79173 0.78565 1.18146 1.19720 1.19316 1.17910 0.91792 1.01306 0.86823 1.41758 1.09962 1.84034 1.05487 0.86515 0.90887 0.86502 0.85911 0.87020 0.86859 0.88465 0.89005 0.90887 0.77943 0.78089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 10.26 71.24 0.73 -2.48 16 2 C 0.35 10.11 7.26 29.10 0.21 10.33 16 3 O -0.50 -20.65 16.76 -1.45 -0.02 -20.68 16 4 C -0.12 -3.39 5.20 29.10 0.15 -3.24 16 5 C -0.15 -6.55 4.39 -19.76 -0.09 -6.63 16 6 C -0.18 -8.37 9.67 22.41 0.22 -8.15 16 7 C -0.17 -8.48 9.96 22.01 0.22 -8.26 16 8 C -0.17 -9.55 8.63 22.46 0.19 -9.35 16 9 C 0.02 1.30 5.57 -21.17 -0.12 1.18 16 10 C -0.50 -27.64 8.50 23.37 0.20 -27.45 16 11 H 0.07 3.84 6.70 -2.91 -0.02 3.82 16 12 C 0.03 1.65 5.15 85.24 0.44 2.08 16 13 N -0.84 -46.84 11.00 21.83 0.24 -46.60 16 14 Si 0.98 40.55 29.59 68.60 2.03 42.58 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 C 0.12 6.08 6.77 38.99 0.26 6.34 16 19 N -0.87 -34.71 8.88 -50.39 -0.45 -35.16 16 20 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 22 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 23 H 0.12 2.86 8.05 -2.39 -0.02 2.84 16 24 H 0.11 2.72 6.82 -2.39 -0.02 2.70 16 25 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 26 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 27 H 0.09 5.53 6.23 -2.91 -0.02 5.52 16 28 H 0.28 14.35 8.30 -92.71 -0.77 13.58 16 29 H 0.39 15.69 7.06 -92.71 -0.65 15.04 16 30 H 0.39 12.43 6.94 -92.70 -0.64 11.79 16 Total: -1.00 -71.55 259.52 4.09 -67.45 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.12 Total: 38.04 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 2.42 Total: -45.63 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -0.21 Total: -81.76 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.02 Total: -20.68 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -71.55 4.09 -67.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307055886.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.641 kcal (2) G-P(sol) polarization free energy of solvation -71.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds