Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48499 * 109.46918 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46845 * 30.00250 * 3 2 1 6 6 H 1.48505 * 109.46772 * 150.00074 * 3 2 1 7 7 C 1.37877 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00166 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47324 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47635 * 179.97438 * 10 9 7 12 12 C 1.46892 * 111.00291 * 180.02562 * 11 10 9 13 13 H 1.08993 * 110.82017 * 31.65920 * 12 11 10 14 14 C 1.54894 * 110.75562 * 155.00305 * 12 11 10 15 15 C 1.54266 * 104.31305 * 156.31936 * 14 12 11 16 16 C 1.53869 * 106.60031 * 336.32486 * 15 14 12 17 17 F 1.39893 * 110.03689 * 119.28403 * 16 15 14 18 18 F 1.39906 * 110.02929 * 240.71775 * 16 15 14 19 19 C 1.54266 * 106.59800 * 359.97438 * 16 15 14 20 20 H 0.97000 * 120.00250 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46960 * 59.99755 * 9 7 2 22 22 H 1.09001 * 109.46791 * 299.99873 * 9 7 2 23 23 H 1.09003 * 109.47509 * 59.99665 * 10 9 7 24 24 H 1.09004 * 109.47331 * 300.00124 * 10 9 7 25 25 H 1.00902 * 110.99614 * 56.03859 * 11 10 9 26 26 H 1.09002 * 110.48891 * 37.57361 * 14 12 11 27 27 H 1.08998 * 110.48494 * 275.06449 * 14 12 11 28 28 H 1.09001 * 110.03084 * 95.60669 * 15 14 12 29 29 H 1.08996 * 110.03108 * 216.98559 * 15 14 12 30 30 H 1.09005 * 110.48526 * 142.29451 * 19 16 15 31 31 H 1.09007 * 110.48724 * 264.79935 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0014 11 7 5.4904 -2.6367 -0.0014 12 6 6.0168 -4.0081 -0.0034 13 1 5.3460 -4.6797 -0.5390 14 6 7.4390 -4.0493 -0.6155 15 6 8.0743 -5.3222 -0.0189 16 6 7.3230 -5.6157 1.2914 17 9 6.7065 -6.8695 1.2200 18 9 8.2113 -5.5787 2.3717 19 6 6.2579 -4.5106 1.4458 20 1 -0.4850 0.8400 0.0004 21 1 3.8744 -0.6809 0.8905 22 1 3.8751 -0.6797 -0.8895 23 1 3.6584 -3.1495 -0.8920 24 1 3.6577 -3.1515 0.8879 25 1 5.8520 -2.1113 0.7804 26 1 8.0065 -3.1662 -0.3220 27 1 7.3848 -4.1231 -1.7017 28 1 7.9585 -6.1567 -0.7106 29 1 9.1311 -5.1513 0.1858 30 1 5.3391 -4.9219 1.8640 31 1 6.6340 -3.7033 2.0743 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308407742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = -121.135883 kcal Electronic energy + Delta-G solvation = -14827.059356 eV Core-core repulsion = 11971.086782 eV Total energy + Delta-G solvation = -2855.972574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.99466 -47.07202 -38.16290 -34.68609 -32.58448 -30.00409 -28.71186 -26.54354 -23.68543 -21.08467 -20.99073 -20.28047 -17.70332 -16.90643 -16.77468 -16.16201 -14.98586 -14.76804 -14.42009 -14.20008 -13.85900 -13.56953 -13.41840 -12.98846 -12.54910 -12.31039 -12.13999 -11.74074 -11.58390 -11.36568 -11.11782 -10.94118 -10.75439 -10.22766 -9.83500 -9.76565 -9.26410 -8.56399 -8.08239 -6.06824 -4.05721 3.30961 3.37985 3.41882 3.61318 3.84563 4.03023 4.21369 4.43781 4.65846 4.95361 5.00276 5.10395 5.19921 5.27637 5.36290 5.49293 5.65300 5.81275 5.96269 6.03253 6.11830 6.21583 6.70511 7.04885 7.32459 7.49704 7.65449 7.82465 8.49838 8.96944 9.55226 11.06482 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.055874 B = 0.005404 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.004310 B = 5180.119483 C = 5327.460052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.071 3.929 11 N -0.681 5.681 12 C 0.088 3.912 13 H 0.092 0.908 14 C -0.111 4.111 15 C -0.163 4.163 16 C 0.282 3.718 17 F -0.200 7.200 18 F -0.203 7.203 19 C -0.194 4.194 20 H 0.263 0.737 21 H 0.013 0.987 22 H 0.021 0.979 23 H 0.067 0.933 24 H 0.024 0.976 25 H 0.339 0.661 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.409 -9.080 0.929 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.057 4.057 11 N -0.310 5.310 12 C -0.024 4.024 13 H 0.110 0.890 14 C -0.149 4.149 15 C -0.201 4.201 16 C 0.246 3.754 17 F -0.181 7.181 18 F -0.184 7.184 19 C -0.234 4.234 20 H 0.073 0.927 21 H 0.032 0.968 22 H 0.040 0.960 23 H 0.085 0.915 24 H 0.043 0.957 25 H 0.157 0.843 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.284 -8.904 0.264 18.561 hybrid contribution 0.146 0.408 1.141 1.221 sum 16.430 -8.495 1.405 18.549 Atomic orbital electron populations 1.69912 1.06341 1.26972 1.50975 1.25010 0.94732 0.99232 0.94426 0.86729 0.80244 0.83408 0.78582 1.20210 1.21480 1.19014 1.21059 0.89334 0.94554 1.51211 0.91093 1.19551 0.96768 0.91721 0.96783 1.22046 0.83635 1.00288 0.99735 1.60623 1.10314 1.10608 1.49474 1.22605 0.96259 0.91609 0.91914 0.88965 1.22358 0.95384 0.96010 1.01141 1.23189 1.01075 1.01262 0.94598 1.21800 0.86494 0.81274 0.85865 1.93009 1.83678 1.44787 1.96656 1.93001 1.70174 1.96606 1.58657 1.24246 0.98871 0.98218 1.02046 0.92682 0.96827 0.96024 0.91499 0.95720 0.84257 0.90223 0.89933 0.88846 0.88877 0.88956 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 10 C 0.07 1.36 5.49 -3.83 -0.02 1.34 16 11 N -0.68 -10.50 6.39 -104.42 -0.67 -11.17 16 12 C 0.09 1.10 3.24 -65.52 -0.21 0.88 16 13 H 0.09 1.20 7.83 -51.93 -0.41 0.79 16 14 C -0.11 -1.12 6.50 -25.07 -0.16 -1.28 16 15 C -0.16 -1.51 6.50 -25.62 -0.17 -1.68 16 16 C 0.28 3.29 2.57 -25.62 -0.07 3.22 16 17 F -0.20 -2.63 17.04 2.25 0.04 -2.59 16 18 F -0.20 -2.59 17.04 2.25 0.04 -2.55 16 19 C -0.19 -2.29 5.99 -24.87 -0.15 -2.44 16 20 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 22 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 23 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.34 4.91 8.22 -39.29 -0.32 4.59 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.78 8.02 -51.93 -0.42 0.37 16 29 H 0.09 0.75 8.02 -51.93 -0.42 0.34 16 30 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 31 H 0.10 1.10 7.77 -51.93 -0.40 0.70 16 LS Contribution 263.94 15.07 3.98 3.98 Total: -1.00 -30.27 263.94 -6.26 -36.53 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.43 Total: -0.56 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -1.33 Total: -13.61 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.11 Total: -38.21 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.08 Total: -5.14 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.27 -6.26 -36.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308407742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.601 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds