Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48499 * 109.46918 * 270.00077 * 3 2 1 5 5 H 1.48499 * 109.46845 * 30.00250 * 3 2 1 6 6 H 1.48505 * 109.46772 * 150.00074 * 3 2 1 7 7 C 1.37877 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00166 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47324 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47635 * 179.97438 * 10 9 7 12 12 C 1.46892 * 111.00291 * 180.02562 * 11 10 9 13 13 H 1.08993 * 110.82017 * 31.65920 * 12 11 10 14 14 C 1.54894 * 110.75562 * 155.00305 * 12 11 10 15 15 C 1.54266 * 104.31305 * 156.31936 * 14 12 11 16 16 C 1.53869 * 106.60031 * 336.32486 * 15 14 12 17 17 F 1.39893 * 110.03689 * 119.28403 * 16 15 14 18 18 F 1.39906 * 110.02929 * 240.71775 * 16 15 14 19 19 C 1.54266 * 106.59800 * 359.97438 * 16 15 14 20 20 H 0.97000 * 120.00250 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46960 * 59.99755 * 9 7 2 22 22 H 1.09001 * 109.46791 * 299.99873 * 9 7 2 23 23 H 1.09003 * 109.47509 * 59.99665 * 10 9 7 24 24 H 1.09004 * 109.47331 * 300.00124 * 10 9 7 25 25 H 1.00902 * 110.99614 * 56.03859 * 11 10 9 26 26 H 1.09002 * 110.48891 * 37.57361 * 14 12 11 27 27 H 1.08998 * 110.48494 * 275.06449 * 14 12 11 28 28 H 1.09001 * 110.03084 * 95.60669 * 15 14 12 29 29 H 1.08996 * 110.03108 * 216.98559 * 15 14 12 30 30 H 1.09005 * 110.48526 * 142.29451 * 19 16 15 31 31 H 1.09007 * 110.48724 * 264.79935 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0014 11 7 5.4904 -2.6367 -0.0014 12 6 6.0168 -4.0081 -0.0034 13 1 5.3460 -4.6797 -0.5390 14 6 7.4390 -4.0493 -0.6155 15 6 8.0743 -5.3222 -0.0189 16 6 7.3230 -5.6157 1.2914 17 9 6.7065 -6.8695 1.2200 18 9 8.2113 -5.5787 2.3717 19 6 6.2579 -4.5106 1.4458 20 1 -0.4850 0.8400 0.0004 21 1 3.8744 -0.6809 0.8905 22 1 3.8751 -0.6797 -0.8895 23 1 3.6584 -3.1495 -0.8920 24 1 3.6577 -3.1515 0.8879 25 1 5.8520 -2.1113 0.7804 26 1 8.0065 -3.1662 -0.3220 27 1 7.3848 -4.1231 -1.7017 28 1 7.9585 -6.1567 -0.7106 29 1 9.1311 -5.1513 0.1858 30 1 5.3391 -4.9219 1.8640 31 1 6.6340 -3.7033 2.0743 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308407742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = -141.091208 kcal Electronic energy + Delta-G solvation = -14827.924684 eV Core-core repulsion = 11971.086782 eV Total energy + Delta-G solvation = -2856.837902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.95250 -48.04248 -39.21266 -36.18838 -34.50594 -31.65638 -29.66999 -27.80947 -25.36530 -22.41941 -22.00544 -21.60282 -19.01353 -18.58616 -17.79413 -17.24555 -16.40303 -16.09962 -15.71936 -15.36999 -15.19567 -14.91257 -14.53135 -14.39370 -14.06786 -13.50628 -13.31006 -13.06180 -12.88133 -12.64405 -12.50090 -12.07710 -11.84788 -11.70868 -11.65204 -11.43962 -11.40606 -10.76776 -9.35990 -8.29595 -6.34597 1.38923 1.39991 1.52402 2.37412 2.70149 2.95859 3.06233 3.06690 3.31218 3.57701 4.04675 4.10522 4.25339 4.27997 4.42297 4.51597 4.55126 4.67585 4.87700 4.88792 4.96448 5.16545 5.21382 5.33874 5.50261 5.63632 6.09866 6.24831 6.49556 6.74522 7.30612 8.87186 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.055874 B = 0.005404 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.004310 B = 5180.119483 C = 5327.460052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.006 4.006 10 C 0.084 3.916 11 N -0.677 5.677 12 C 0.084 3.916 13 H 0.085 0.915 14 C -0.102 4.102 15 C -0.153 4.153 16 C 0.277 3.723 17 F -0.211 7.211 18 F -0.210 7.210 19 C -0.192 4.192 20 H 0.267 0.733 21 H 0.021 0.979 22 H 0.024 0.976 23 H 0.058 0.942 24 H 0.018 0.982 25 H 0.347 0.653 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.993 -8.402 0.715 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.043 4.043 10 C -0.045 4.045 11 N -0.307 5.307 12 C -0.027 4.027 13 H 0.103 0.897 14 C -0.140 4.140 15 C -0.191 4.191 16 C 0.240 3.760 17 F -0.192 7.192 18 F -0.191 7.191 19 C -0.232 4.232 20 H 0.075 0.925 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.036 0.964 25 H 0.166 0.834 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 18.895 -8.249 0.054 20.618 hybrid contribution -0.713 0.097 1.228 1.423 sum 18.183 -8.153 1.282 19.968 Atomic orbital electron populations 1.70070 1.08414 1.28254 1.52560 1.26031 0.95612 1.03676 0.93953 0.85577 0.79446 0.77874 0.79214 1.19217 1.21156 1.16748 1.21435 0.92114 0.93160 1.50711 0.95117 1.19446 0.93405 0.94509 0.96973 1.21693 0.86274 0.97415 0.99069 1.60537 1.07517 1.12623 1.50002 1.22668 0.97634 0.89800 0.92618 0.89675 1.22309 0.93352 0.96764 1.01554 1.23176 1.01602 1.01175 0.93162 1.22027 0.86555 0.80559 0.86810 1.92990 1.83980 1.45537 1.96733 1.92989 1.70266 1.96586 1.59225 1.24192 0.98704 0.98661 1.01632 0.92457 0.96052 0.95756 0.92391 0.96417 0.83386 0.89471 0.89015 0.87668 0.87053 0.90101 0.87495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.96 44.07 27.47 68.60 1.88 45.96 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.54 -30.87 9.66 25.60 0.25 -30.62 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.25 4.30 29.85 0.13 -0.12 16 10 C 0.08 3.20 5.49 86.30 0.47 3.67 16 11 N -0.68 -19.53 6.39 -484.28 -3.09 -22.63 16 12 C 0.08 1.94 3.24 46.34 0.15 2.09 16 13 H 0.09 2.11 7.83 -2.39 -0.02 2.09 16 14 C -0.10 -1.74 6.50 31.67 0.21 -1.53 16 15 C -0.15 -2.37 6.50 31.32 0.20 -2.16 16 16 C 0.28 5.91 2.57 31.32 0.08 5.99 16 17 F -0.21 -5.28 17.04 44.97 0.77 -4.52 16 18 F -0.21 -4.93 17.04 44.97 0.77 -4.17 16 19 C -0.19 -4.25 5.99 31.80 0.19 -4.06 16 20 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 21 H 0.02 0.94 7.20 -2.39 -0.02 0.93 16 22 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 23 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 24 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.35 9.17 8.22 -89.69 -0.74 8.43 16 26 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 1.42 8.02 -2.39 -0.02 1.41 16 29 H 0.11 1.38 8.02 -2.39 -0.02 1.36 16 30 H 0.08 1.97 8.11 -2.38 -0.02 1.95 16 31 H 0.11 2.18 7.77 -2.38 -0.02 2.16 16 Total: -1.00 -65.32 263.94 3.09 -62.23 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.33 Total: 8.82 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 2.14 Total: -26.06 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.80 Total: -82.27 kcal Atomic # 9 Polarization: -10.22 SS G_CDS: 1.53 Total: -8.68 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.96 kcal Total: -65.32 3.09 -62.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308407742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.859 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds