Wall clock time and date at job start Mon Mar 30 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33282 * 125.78867 * 2 1 4 4 C 1.31668 * 109.21912 * 179.75936 * 3 2 1 5 5 C 1.43192 * 125.85953 * 180.26909 * 4 3 2 6 6 N 4.66690 * 150.87405 * 0.45325 * 2 1 3 7 7 N 1.36688 * 108.28163 * 0.43877 * 4 3 2 8 8 C 1.46496 * 126.49436 * 179.82444 * 7 4 3 9 9 C 1.52997 * 109.47294 * 269.69129 * 8 7 4 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.35372 * 125.80330 * 180.02562 * 2 1 3 19 19 C 1.50701 * 126.45631 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.47323 * 269.95204 * 1 2 3 21 21 H 1.08998 * 109.47601 * 29.96003 * 1 2 3 22 22 H 1.09012 * 109.46749 * 149.96133 * 1 2 3 23 23 H 1.09001 * 109.47059 * 149.69419 * 8 7 4 24 24 H 1.09004 * 109.47074 * 29.69375 * 8 7 4 25 25 H 1.09001 * 109.46832 * 60.00150 * 9 8 7 26 26 H 1.09000 * 109.47611 * 300.00447 * 9 8 7 27 27 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.47012 * 269.96786 * 19 18 2 29 29 H 1.09000 * 109.47580 * 29.97445 * 19 18 2 30 30 H 1.09005 * 109.47022 * 149.97729 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.0812 0.0000 4 6 3.5484 0.7057 0.0052 5 6 4.6833 1.5788 0.0124 6 7 5.5838 2.2715 0.0180 7 7 3.5893 -0.6606 -0.0012 8 6 4.7925 -1.4963 -0.0022 9 6 5.2106 -1.7867 -1.4450 10 6 6.4488 -2.6458 -1.4460 11 1 6.8927 -2.9542 -0.5110 12 6 7.0148 -3.0381 -2.6404 13 7 8.0950 -3.7883 -2.6412 14 14 6.2465 -2.5053 -4.2576 15 1 6.8406 -1.2135 -4.6860 16 1 6.5066 -3.5374 -5.2930 17 1 4.7814 -2.3413 -4.0792 18 6 2.2989 -1.0979 -0.0005 19 6 1.8397 -2.5333 -0.0006 20 1 -0.3634 -0.0009 1.0277 21 1 -0.3634 0.8903 -0.5132 22 1 -0.3633 -0.8897 -0.5145 23 1 4.5835 -2.4347 0.5114 24 1 5.5989 -0.9727 0.5115 25 1 5.4197 -0.8482 -1.9585 26 1 4.4043 -2.3101 -1.9587 27 1 8.4929 -4.0646 -3.4816 28 1 1.7300 -2.8797 1.0271 29 1 0.8810 -2.6081 -0.5137 30 1 2.5763 -3.1504 -0.5152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603347299.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:38 Heat of formation + Delta-G solvation = 75.267831 kcal Electronic energy + Delta-G solvation = -14202.634019 eV Core-core repulsion = 11805.867336 eV Total energy + Delta-G solvation = -2396.766683 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.16174 -36.39646 -35.27029 -32.92986 -32.64348 -30.56986 -28.48102 -26.53557 -25.39635 -22.10965 -20.93809 -19.85198 -18.24097 -17.00120 -15.81299 -15.43838 -14.37855 -14.17081 -13.75706 -13.50220 -13.19923 -13.07689 -12.81037 -12.77749 -12.62740 -12.43419 -12.30278 -11.99222 -11.69777 -11.28796 -10.79741 -10.49960 -10.05939 -9.96186 -9.55486 -9.29437 -8.76487 -8.07302 -6.26951 -4.29917 1.49021 2.34748 2.66953 3.02477 3.17992 3.25979 3.28201 3.68568 3.86190 4.25928 4.76662 4.95037 5.05942 5.12616 5.22379 5.49126 5.56719 5.68957 5.74821 5.92290 5.93679 6.00416 6.02709 6.39952 6.71331 6.75943 6.94339 7.07023 7.44812 7.53598 7.96845 8.21824 8.72584 9.32638 10.85229 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.008763 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.005137 B = 3194.308828 C = 3643.398825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.006 4.006 3 N -0.436 5.436 4 C 0.243 3.757 5 C 0.304 3.696 6 N -0.383 5.383 7 N -0.411 5.411 8 C 0.103 3.897 9 C -0.021 4.021 10 C -0.532 4.532 11 H 0.077 0.923 12 C 0.077 3.923 13 N -0.892 5.892 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.020 3.980 19 C -0.085 4.085 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.018 0.982 26 H 0.028 0.972 27 H 0.267 0.733 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.434 2.247 4.822 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.141 4.141 3 N -0.157 5.157 4 C -0.014 4.014 5 C -0.014 4.014 6 N -0.062 5.062 7 N -0.092 5.092 8 C -0.017 4.017 9 C -0.059 4.059 10 C -0.570 4.570 11 H 0.096 0.904 12 C -0.127 4.127 13 N -0.529 5.529 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.189 1.189 18 C -0.101 4.101 19 C -0.143 4.143 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.117 0.883 24 H 0.108 0.892 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.991 3.929 4.711 14.367 hybrid contribution -0.100 -0.833 -0.977 1.288 sum -13.092 3.096 3.734 13.962 Atomic orbital electron populations 1.20019 0.87081 1.02718 1.02158 1.20517 0.96512 0.87226 1.09797 1.70096 0.98172 1.30698 1.16749 1.16937 0.89176 0.79883 1.15451 1.23263 0.91170 0.93087 0.93832 1.81268 1.08275 1.07678 1.08961 1.45813 1.08075 1.05814 1.49491 1.22425 0.82464 0.94136 1.02630 1.19917 0.98218 0.97703 0.90024 1.20784 1.09217 1.31948 0.95065 0.90448 1.24922 0.94437 0.94170 0.99125 1.69878 1.20243 1.35419 1.27366 0.86831 0.80442 0.78853 0.83590 1.20010 1.20878 1.18950 1.21329 0.82963 0.97976 1.07840 1.20377 1.02353 0.88406 1.03124 0.91398 0.91175 0.91144 0.88341 0.89178 0.96337 0.95396 0.92266 0.90420 0.89672 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.22 36.01 0.37 -0.25 16 2 C -0.01 -0.08 7.07 -82.99 -0.59 -0.67 16 3 N -0.44 -7.43 11.27 -8.67 -0.10 -7.53 16 4 C 0.24 4.28 7.66 -156.27 -1.20 3.09 16 5 C 0.30 5.56 15.32 -22.47 -0.34 5.21 16 6 N -0.38 -7.32 18.54 41.84 0.78 -6.55 16 7 N -0.41 -6.90 2.78 -111.26 -0.31 -7.21 16 8 C 0.10 1.85 5.57 -4.05 -0.02 1.82 16 9 C -0.02 -0.45 4.37 -27.88 -0.12 -0.58 16 10 C -0.53 -14.07 9.66 -34.44 -0.33 -14.40 16 11 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 12 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 14 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 18 C 0.02 0.29 6.95 -81.65 -0.57 -0.27 16 19 C -0.08 -0.91 9.76 36.01 0.35 -0.56 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.56 7.16 -51.92 -0.37 0.19 16 23 H 0.10 1.57 7.78 -51.93 -0.40 1.17 16 24 H 0.09 1.62 7.81 -51.93 -0.41 1.21 16 25 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 26 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.72 7.16 -51.93 -0.37 0.35 16 30 H 0.08 0.94 7.84 -51.93 -0.41 0.54 16 LS Contribution 270.05 15.07 4.07 4.07 Total: -1.00 -30.37 270.05 -5.59 -35.96 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: -3.58 Total: -5.01 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.55 Total: -4.57 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 1.14 Total: -46.76 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.37 -5.59 -35.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603347299.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.227 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds