Wall clock time and date at job start Mon Mar 30 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33282 * 125.78867 * 2 1 4 4 C 1.31668 * 109.21912 * 179.75936 * 3 2 1 5 5 C 1.43192 * 125.85953 * 180.26909 * 4 3 2 6 6 N 4.66690 * 150.87405 * 0.45325 * 2 1 3 7 7 N 1.36688 * 108.28163 * 0.43877 * 4 3 2 8 8 C 1.46496 * 126.49436 * 179.82444 * 7 4 3 9 9 C 1.52997 * 109.47294 * 269.69129 * 8 7 4 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.35372 * 125.80330 * 180.02562 * 2 1 3 19 19 C 1.50701 * 126.45631 * 359.97438 * 18 2 1 20 20 H 1.09001 * 109.47323 * 269.95204 * 1 2 3 21 21 H 1.08998 * 109.47601 * 29.96003 * 1 2 3 22 22 H 1.09012 * 109.46749 * 149.96133 * 1 2 3 23 23 H 1.09001 * 109.47059 * 149.69419 * 8 7 4 24 24 H 1.09004 * 109.47074 * 29.69375 * 8 7 4 25 25 H 1.09001 * 109.46832 * 60.00150 * 9 8 7 26 26 H 1.09000 * 109.47611 * 300.00447 * 9 8 7 27 27 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 28 28 H 1.09002 * 109.47012 * 269.96786 * 19 18 2 29 29 H 1.09000 * 109.47580 * 29.97445 * 19 18 2 30 30 H 1.09005 * 109.47022 * 149.97729 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2864 1.0812 0.0000 4 6 3.5484 0.7057 0.0052 5 6 4.6833 1.5788 0.0124 6 7 5.5838 2.2715 0.0180 7 7 3.5893 -0.6606 -0.0012 8 6 4.7925 -1.4963 -0.0022 9 6 5.2106 -1.7867 -1.4450 10 6 6.4488 -2.6458 -1.4460 11 1 6.8927 -2.9542 -0.5110 12 6 7.0148 -3.0381 -2.6404 13 7 8.0950 -3.7883 -2.6412 14 14 6.2465 -2.5053 -4.2576 15 1 6.8406 -1.2135 -4.6860 16 1 6.5066 -3.5374 -5.2930 17 1 4.7814 -2.3413 -4.0792 18 6 2.2989 -1.0979 -0.0005 19 6 1.8397 -2.5333 -0.0006 20 1 -0.3634 -0.0009 1.0277 21 1 -0.3634 0.8903 -0.5132 22 1 -0.3633 -0.8897 -0.5145 23 1 4.5835 -2.4347 0.5114 24 1 5.5989 -0.9727 0.5115 25 1 5.4197 -0.8482 -1.9585 26 1 4.4043 -2.3101 -1.9587 27 1 8.4929 -4.0646 -3.4816 28 1 1.7300 -2.8797 1.0271 29 1 0.8810 -2.6081 -0.5137 30 1 2.5763 -3.1504 -0.5152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603347299.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:38 Heat of formation + Delta-G solvation = 57.182163 kcal Electronic energy + Delta-G solvation = -14203.418272 eV Core-core repulsion = 11805.867336 eV Total energy + Delta-G solvation = -2397.550937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.37936 -37.82540 -36.77449 -34.79906 -33.69322 -32.19496 -29.51733 -27.68693 -27.02994 -23.64877 -22.39603 -21.01715 -19.71372 -18.83569 -17.17047 -16.77637 -16.29520 -15.57746 -14.96026 -14.88124 -14.71464 -14.57230 -14.01221 -13.94144 -13.83591 -13.62660 -13.46784 -13.08725 -12.98091 -12.76263 -12.44114 -12.20904 -11.89792 -11.61086 -11.19044 -10.87947 -10.64721 -9.20028 -8.39365 -6.45825 0.18057 0.99929 1.28781 1.31717 1.40395 1.51411 1.68608 2.25947 2.33845 2.53370 2.96057 3.67155 3.71942 4.07114 4.15253 4.21835 4.45411 4.54969 4.82371 4.93477 5.01882 5.03580 5.13508 5.17438 5.22991 5.37695 5.41594 5.69579 5.85538 6.09820 6.14725 6.61483 6.77068 7.19885 8.76077 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.008763 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.005137 B = 3194.308828 C = 3643.398825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.010 4.010 3 N -0.448 5.448 4 C 0.211 3.789 5 C 0.313 3.687 6 N -0.412 5.412 7 N -0.417 5.417 8 C 0.116 3.884 9 C -0.014 4.014 10 C -0.533 4.533 11 H 0.050 0.950 12 C 0.020 3.980 13 N -0.938 5.938 14 Si 0.936 3.064 15 H -0.279 1.279 16 H -0.277 1.277 17 H -0.246 1.246 18 C 0.027 3.973 19 C -0.085 4.085 20 H 0.085 0.915 21 H 0.069 0.931 22 H 0.097 0.903 23 H 0.120 0.880 24 H 0.083 0.917 25 H 0.005 0.995 26 H 0.037 0.963 27 H 0.269 0.731 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 1.762 4.621 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.145 4.145 3 N -0.171 5.171 4 C -0.044 4.044 5 C -0.004 4.004 6 N -0.092 5.092 7 N -0.099 5.099 8 C -0.004 4.004 9 C -0.052 4.052 10 C -0.571 4.571 11 H 0.068 0.932 12 C -0.179 4.179 13 N -0.578 5.578 14 Si 0.760 3.240 15 H -0.205 1.205 16 H -0.202 1.202 17 H -0.169 1.169 18 C -0.094 4.094 19 C -0.143 4.143 20 H 0.104 0.896 21 H 0.087 0.913 22 H 0.116 0.884 23 H 0.138 0.862 24 H 0.101 0.899 25 H 0.024 0.976 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.921 3.464 4.523 16.910 hybrid contribution 0.730 -0.718 -0.831 1.319 sum -15.192 2.746 3.692 15.873 Atomic orbital electron populations 1.20208 0.83853 1.04057 1.03724 1.21303 0.98381 0.86327 1.08529 1.70112 0.98180 1.32101 1.16658 1.16920 0.89203 0.80224 1.18071 1.23488 0.91096 0.92765 0.93023 1.81254 1.09029 1.08511 1.10361 1.45746 1.08542 1.05362 1.50220 1.22095 0.83178 0.95246 0.99921 1.19750 0.96478 0.96060 0.92886 1.21097 1.10421 1.31650 0.93926 0.93182 1.25772 0.94938 0.94382 1.02838 1.70007 1.22068 1.37343 1.28360 0.85877 0.80575 0.78140 0.79446 1.20456 1.20189 1.16895 1.22102 0.81751 0.99879 1.05706 1.20600 1.03249 0.85498 1.04933 0.89641 0.91252 0.88420 0.86214 0.89906 0.97625 0.94474 0.92148 0.88056 0.86689 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.22 71.24 0.73 -0.24 16 2 C -0.01 -0.27 7.07 41.68 0.29 0.03 16 3 N -0.45 -14.58 11.27 -181.35 -2.04 -16.62 16 4 C 0.21 7.26 7.66 135.08 1.03 8.30 16 5 C 0.31 11.53 15.32 88.33 1.35 12.89 16 6 N -0.41 -16.04 18.54 19.00 0.35 -15.69 16 7 N -0.42 -13.28 2.78 -505.92 -1.41 -14.68 16 8 C 0.12 4.02 5.57 86.38 0.48 4.50 16 9 C -0.01 -0.59 4.37 29.85 0.13 -0.46 16 10 C -0.53 -28.32 9.66 25.60 0.25 -28.07 16 11 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 12 C 0.02 1.10 5.47 84.65 0.46 1.56 16 13 N -0.94 -56.15 13.96 21.44 0.30 -55.86 16 14 Si 0.94 42.80 27.47 68.60 1.88 44.68 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 17 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 18 C 0.03 0.68 6.95 41.21 0.29 0.97 16 19 C -0.09 -1.46 9.76 71.24 0.70 -0.76 16 20 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.10 1.03 7.16 -2.38 -0.02 1.01 16 23 H 0.12 3.60 7.78 -2.39 -0.02 3.59 16 24 H 0.08 2.97 7.81 -2.38 -0.02 2.95 16 25 H 0.01 0.25 7.57 -2.39 -0.02 0.23 16 26 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.11 1.30 7.16 -2.39 -0.02 1.28 16 30 H 0.07 1.36 7.84 -2.38 -0.02 1.34 16 Total: -1.00 -66.19 270.05 5.89 -60.30 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.09 Total: -0.85 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.71 Total: -1.28 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -2.80 Total: -102.85 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -66.19 5.89 -60.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603347299.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.483 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds