Wall clock time and date at job start Mon Mar 30 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47307 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46984 * 300.00165 * 3 2 1 6 6 H 1.48504 * 109.47147 * 59.99806 * 3 2 1 7 7 C 1.37876 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47235 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47183 * 179.97438 * 10 9 7 12 12 C 1.47846 * 111.00020 * 290.12614 * 11 10 9 13 13 C 1.54908 * 104.89238 * 213.57993 * 12 11 10 14 14 C 1.55422 * 101.52379 * 37.06612 * 13 12 11 15 15 H 1.09004 * 110.69257 * 82.75585 * 14 13 12 16 16 C 1.52997 * 110.84511 * 205.90323 * 14 13 12 17 17 F 1.39897 * 109.47264 * 293.71149 * 16 14 13 18 18 F 1.39904 * 109.47151 * 53.71241 * 16 14 13 19 19 C 1.47448 * 111.00041 * 169.28484 * 11 10 9 20 20 H 0.97002 * 119.99667 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47125 * 59.99709 * 9 7 2 22 22 H 1.09000 * 109.46535 * 299.99607 * 9 7 2 23 23 H 1.09011 * 109.47598 * 60.00076 * 10 9 7 24 24 H 1.09004 * 109.47619 * 299.99992 * 10 9 7 25 25 H 1.09002 * 110.37464 * 332.46590 * 12 11 10 26 26 H 1.08999 * 110.37318 * 94.69366 * 12 11 10 27 27 H 1.08998 * 110.98718 * 155.22204 * 13 12 11 28 28 H 1.08998 * 110.98705 * 279.03118 * 13 12 11 29 29 H 1.09004 * 109.47402 * 173.71061 * 16 14 13 30 30 H 1.08999 * 109.88737 * 242.66366 * 19 11 10 31 31 H 1.08997 * 109.88833 * 3.69001 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.8350 -5.1552 1.2974 13 6 0.8773 -6.6888 1.5121 14 6 2.2741 -7.0452 0.9311 15 1 3.0551 -6.8705 1.6712 16 6 2.3074 -8.4953 0.4443 17 9 2.1754 -9.3575 1.5381 18 9 1.2532 -8.7114 -0.4497 19 6 2.4178 -6.0682 -0.2548 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5566 0.8904 23 1 2.8720 -3.6043 0.8906 24 1 2.8720 -3.6043 -0.8895 25 1 1.3720 -4.6451 2.0972 26 1 -0.1968 -4.8068 1.2518 27 1 0.8182 -6.9364 2.5719 28 1 0.0836 -7.1834 0.9523 29 1 3.2553 -8.6883 -0.0582 30 1 2.1358 -6.5666 -1.1822 31 1 3.4459 -5.7126 -0.3229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611179971.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:09 Heat of formation + Delta-G solvation = -114.071785 kcal Electronic energy + Delta-G solvation = -14959.392167 eV Core-core repulsion = 12103.725915 eV Total energy + Delta-G solvation = -2855.666252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.00841 -46.99607 -38.69337 -33.85579 -32.17830 -29.54849 -28.83635 -25.37524 -23.98026 -21.66469 -20.51122 -19.94561 -17.49309 -17.16685 -16.73005 -16.31506 -15.27684 -14.50656 -14.21286 -14.01255 -13.75804 -13.42417 -13.07444 -12.74148 -12.50849 -12.23951 -12.08093 -11.34300 -11.24547 -11.05294 -10.89953 -10.72946 -10.62979 -10.50006 -9.87344 -9.39112 -9.12135 -8.35110 -7.78910 -6.00083 -4.02857 3.30578 3.37987 3.41611 3.70205 4.10378 4.23296 4.38302 4.44759 4.61947 4.94652 5.07448 5.28408 5.35945 5.50464 5.54281 5.75398 5.89594 6.00777 6.13591 6.27478 6.37282 6.42459 6.94001 7.42706 7.47242 7.75362 7.88179 8.07488 8.42260 9.04782 9.61008 11.11363 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.077577 B = 0.005242 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.846442 B = 5339.739937 C = 5413.363392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.057 3.943 11 N -0.527 5.527 12 C 0.050 3.950 13 C -0.124 4.124 14 C -0.166 4.166 15 H 0.102 0.898 16 C 0.273 3.727 17 F -0.209 7.209 18 F -0.200 7.200 19 C 0.050 3.950 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.016 0.984 23 H 0.022 0.978 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 -15.254 2.057 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.070 4.070 11 N -0.251 5.251 12 C -0.078 4.078 13 C -0.162 4.162 14 C -0.186 4.186 15 H 0.120 0.880 16 C 0.219 3.781 17 F -0.190 7.190 18 F -0.182 7.182 19 C -0.079 4.079 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.481 -15.110 1.654 15.847 hybrid contribution 1.012 0.867 0.680 1.496 sum 5.493 -14.244 2.334 15.443 Atomic orbital electron populations 1.69986 1.06038 1.26479 1.50673 1.24996 0.94823 0.99190 0.95295 0.86544 0.80049 0.83830 0.77603 1.19797 1.20954 1.21031 1.21229 0.92974 0.91081 1.50861 0.92785 1.19058 0.93955 0.90010 0.97897 1.22584 0.96719 0.88731 0.98917 1.63687 1.28234 1.02105 1.31029 1.22987 1.00869 0.93428 0.90507 1.22825 0.95079 0.97287 1.01018 1.23642 1.01425 0.92834 1.00743 0.87982 1.21749 0.89291 0.88850 0.78238 1.92966 1.96908 1.72632 1.56506 1.92981 1.61141 1.95566 1.68490 1.22811 0.96734 0.91743 0.96590 0.93029 0.95683 0.96548 0.96011 0.92072 0.93332 0.89770 0.90587 0.89980 0.87353 0.90353 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.74 5.03 -27.89 -0.14 0.60 16 10 C 0.06 1.20 4.52 -3.83 -0.02 1.19 16 11 N -0.53 -9.57 5.16 -231.24 -1.19 -10.76 16 12 C 0.05 0.82 5.81 -2.30 -0.01 0.81 16 13 C -0.12 -1.64 6.42 -24.44 -0.16 -1.80 16 14 C -0.17 -1.96 3.16 -88.64 -0.28 -2.24 16 15 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 16 C 0.27 2.87 4.90 37.16 0.18 3.05 16 17 F -0.21 -2.45 17.24 2.25 0.04 -2.41 16 18 F -0.20 -2.57 15.82 2.25 0.04 -2.53 16 19 C 0.05 0.70 6.39 -2.83 -0.02 0.68 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.02 0.45 7.52 -51.93 -0.39 0.06 16 23 H 0.02 0.45 7.83 -51.92 -0.41 0.04 16 24 H 0.06 1.26 8.01 -51.93 -0.42 0.84 16 25 H 0.05 0.82 7.61 -51.93 -0.40 0.43 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.13 7.34 -51.93 -0.38 0.75 16 29 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.07 7.36 -51.93 -0.38 0.69 16 31 H 0.06 0.77 7.54 -51.93 -0.39 0.38 16 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -30.69 263.12 -6.71 -37.40 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -4.42 Total: -4.73 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.86 Total: -11.28 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.46 Total: -37.02 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.69 -6.71 -37.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611179971.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.668 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds