Wall clock time and date at job start Mon Mar 30 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48502 * 109.47307 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46984 * 300.00165 * 3 2 1 6 6 H 1.48504 * 109.47147 * 59.99806 * 3 2 1 7 7 C 1.37876 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00217 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47235 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47183 * 179.97438 * 10 9 7 12 12 C 1.47846 * 111.00020 * 290.12614 * 11 10 9 13 13 C 1.54908 * 104.89238 * 213.57993 * 12 11 10 14 14 C 1.55422 * 101.52379 * 37.06612 * 13 12 11 15 15 H 1.09004 * 110.69257 * 82.75585 * 14 13 12 16 16 C 1.52997 * 110.84511 * 205.90323 * 14 13 12 17 17 F 1.39897 * 109.47264 * 293.71149 * 16 14 13 18 18 F 1.39904 * 109.47151 * 53.71241 * 16 14 13 19 19 C 1.47448 * 111.00041 * 169.28484 * 11 10 9 20 20 H 0.97002 * 119.99667 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47125 * 59.99709 * 9 7 2 22 22 H 1.09000 * 109.46535 * 299.99607 * 9 7 2 23 23 H 1.09011 * 109.47598 * 60.00076 * 10 9 7 24 24 H 1.09004 * 109.47619 * 299.99992 * 10 9 7 25 25 H 1.09002 * 110.37464 * 332.46590 * 12 11 10 26 26 H 1.08999 * 110.37318 * 94.69366 * 12 11 10 27 27 H 1.08998 * 110.98718 * 155.22204 * 13 12 11 28 28 H 1.08998 * 110.98705 * 279.03118 * 13 12 11 29 29 H 1.09004 * 109.47402 * 173.71061 * 16 14 13 30 30 H 1.08999 * 109.88737 * 242.66366 * 19 11 10 31 31 H 1.08997 * 109.88833 * 3.69001 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.8350 -5.1552 1.2974 13 6 0.8773 -6.6888 1.5121 14 6 2.2741 -7.0452 0.9311 15 1 3.0551 -6.8705 1.6712 16 6 2.3074 -8.4953 0.4443 17 9 2.1754 -9.3575 1.5381 18 9 1.2532 -8.7114 -0.4497 19 6 2.4178 -6.0682 -0.2548 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5566 0.8904 23 1 2.8720 -3.6043 0.8906 24 1 2.8720 -3.6043 -0.8895 25 1 1.3720 -4.6451 2.0972 26 1 -0.1968 -4.8068 1.2518 27 1 0.8182 -6.9364 2.5719 28 1 0.0836 -7.1834 0.9523 29 1 3.2553 -8.6883 -0.0582 30 1 2.1358 -6.5666 -1.1822 31 1 3.4459 -5.7126 -0.3229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611179971.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:09 Heat of formation + Delta-G solvation = -134.101943 kcal Electronic energy + Delta-G solvation = -14960.260740 eV Core-core repulsion = 12103.725915 eV Total energy + Delta-G solvation = -2856.534824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.87762 -47.87758 -39.98066 -35.71885 -33.90303 -30.93170 -30.39771 -26.87625 -25.44214 -23.31473 -21.57135 -21.47729 -18.58183 -18.38061 -18.00119 -17.63029 -16.66629 -16.40428 -15.58671 -15.50970 -14.77048 -14.50447 -14.27546 -14.05608 -13.88862 -13.76213 -13.52829 -12.95990 -12.89031 -12.65359 -12.34094 -12.25921 -11.90723 -11.71184 -11.56589 -11.34196 -11.19531 -10.56669 -9.20826 -8.20434 -6.32348 1.40586 1.41108 1.54369 2.40153 2.81474 3.11989 3.13279 3.30891 3.35335 3.55005 3.94152 4.14892 4.25926 4.36533 4.42889 4.47414 4.58064 4.70899 4.87396 4.91070 5.00072 5.10041 5.16622 5.45475 5.63476 5.78334 6.06013 6.19403 6.31655 6.85728 7.37363 8.92179 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.077577 B = 0.005242 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.846442 B = 5339.739937 C = 5413.363392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.035 3.965 10 C 0.076 3.924 11 N -0.549 5.549 12 C 0.047 3.953 13 C -0.117 4.117 14 C -0.157 4.157 15 H 0.122 0.878 16 C 0.273 3.727 17 F -0.215 7.215 18 F -0.216 7.216 19 C 0.048 3.952 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.010 1.010 23 H 0.028 0.972 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -15.894 2.262 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.081 0.919 9 C -0.003 4.003 10 C -0.052 4.052 11 N -0.273 5.273 12 C -0.081 4.081 13 C -0.155 4.155 14 C -0.177 4.177 15 H 0.140 0.860 16 C 0.220 3.780 17 F -0.196 7.196 18 F -0.197 7.197 19 C -0.079 4.079 20 H 0.072 0.928 21 H 0.007 0.993 22 H 0.009 0.991 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.169 0.831 30 H 0.101 0.899 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.517 -15.776 1.860 17.170 hybrid contribution 0.321 1.041 0.613 1.250 sum 6.839 -14.735 2.473 16.432 Atomic orbital electron populations 1.70129 1.07959 1.27733 1.51564 1.25996 0.95727 1.03464 0.94609 0.85355 0.79100 0.78542 0.77757 1.18346 1.20405 1.20394 1.21668 0.93588 0.92194 1.50751 0.91936 1.18898 0.94288 0.92213 0.94854 1.22198 0.95205 0.88443 0.99340 1.63522 1.29377 1.02363 1.32053 1.22946 0.99306 0.96051 0.89779 1.22755 0.96204 0.94287 1.02253 1.23602 1.00719 0.93385 1.00012 0.86014 1.22049 0.90393 0.87610 0.77986 1.92957 1.96996 1.72675 1.56993 1.92957 1.62217 1.95572 1.68988 1.22848 0.96617 0.90703 0.97767 0.92772 0.99274 0.99131 0.95429 0.91563 0.93890 0.92130 0.88777 0.90674 0.83119 0.89873 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.40 7.74 -2.90 -0.02 3.37 16 9 C 0.03 1.90 5.03 29.84 0.15 2.05 16 10 C 0.08 3.17 4.52 86.30 0.39 3.56 16 11 N -0.55 -19.83 5.16 -885.51 -4.57 -24.40 16 12 C 0.05 1.57 5.81 86.77 0.50 2.07 16 13 C -0.12 -2.94 6.42 32.08 0.21 -2.73 16 14 C -0.16 -3.27 3.16 -9.51 -0.03 -3.30 16 15 H 0.12 2.11 8.14 -2.38 -0.02 2.10 16 16 C 0.27 4.84 4.90 71.98 0.35 5.19 16 17 F -0.21 -4.41 17.24 44.97 0.78 -3.63 16 18 F -0.22 -5.06 15.82 44.97 0.71 -4.35 16 19 C 0.05 1.25 6.39 86.65 0.55 1.80 16 20 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 21 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 22 H -0.01 -0.57 7.52 -2.39 -0.02 -0.58 16 23 H 0.03 1.11 7.83 -2.38 -0.02 1.10 16 24 H 0.07 2.68 8.01 -2.39 -0.02 2.66 16 25 H 0.04 1.47 7.61 -2.39 -0.02 1.45 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 2.00 7.34 -2.39 -0.02 1.98 16 29 H 0.15 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 2.09 7.36 -2.39 -0.02 2.07 16 31 H 0.07 1.72 7.54 -2.39 -0.02 1.70 16 Total: -1.00 -67.11 263.12 3.16 -63.96 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 1.10 Total: 1.41 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 2.82 Total: -21.83 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -4.28 Total: -81.86 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 1.49 Total: -7.98 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.11 3.16 -63.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611179971.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.145 kcal (2) G-P(sol) polarization free energy of solvation -67.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds