Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47034 * 270.00122 * 3 2 1 5 5 H 1.48495 * 109.46991 * 29.99959 * 3 2 1 6 6 H 1.48496 * 109.47333 * 150.00177 * 3 2 1 7 7 C 1.38818 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99716 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99897 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 175.00162 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47127 * 300.00449 * 13 12 11 15 15 F 1.39900 * 109.46764 * 299.99647 * 14 13 12 16 16 F 1.39903 * 109.46814 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47164 * 59.99836 * 14 13 12 18 18 C 1.52996 * 109.47302 * 295.00379 * 11 10 9 19 19 H 0.97000 * 119.99943 * 359.97438 * 1 2 3 20 20 H 0.97004 * 120.00227 * 0.02562 * 9 7 2 21 21 H 1.09002 * 109.46745 * 60.00248 * 10 9 7 22 22 H 1.08994 * 109.47346 * 300.00804 * 10 9 7 23 23 H 1.09001 * 109.46652 * 55.00507 * 11 10 9 24 24 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 25 25 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 26 26 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 27 27 H 1.08996 * 109.47853 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47045 * 180.02562 * 17 14 13 29 29 H 1.09001 * 109.47375 * 59.99966 * 17 14 13 30 30 H 1.08992 * 109.47554 * 299.99692 * 18 11 10 31 31 H 1.09004 * 109.47108 * 59.99942 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0024 12 6 6.3804 -3.5111 0.1233 13 6 7.8846 -3.2315 0.1227 14 6 8.2741 -2.5391 -1.1850 15 9 7.9534 -3.3683 -2.2651 16 9 9.6497 -2.2840 -1.1857 17 6 7.5101 -1.2195 -1.3106 18 6 6.0054 -1.4994 -1.3102 19 1 -0.4850 0.8400 0.0004 20 1 3.8646 -0.3621 -0.0007 21 1 3.8484 -3.0427 -0.8909 22 1 3.8490 -3.0424 0.8890 23 1 5.8665 -1.5452 0.8391 24 1 6.1031 -4.0041 1.0551 25 1 6.1302 -4.1573 -0.7181 26 1 8.1345 -2.5854 0.9642 27 1 8.4290 -4.1716 0.2118 28 1 7.7872 -0.7265 -2.2423 29 1 7.7599 -0.5735 -0.4689 30 1 5.7553 -2.1455 -2.1516 31 1 5.4610 -0.5593 -1.3997 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642837447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = -112.716365 kcal Electronic energy + Delta-G solvation = -15339.308841 eV Core-core repulsion = 12483.701364 eV Total energy + Delta-G solvation = -2855.607476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.97271 -46.95850 -38.23004 -34.53755 -31.72779 -31.16504 -29.67926 -25.32188 -23.27421 -22.34406 -20.95352 -19.88651 -17.67583 -17.33580 -16.74544 -16.24859 -14.69989 -14.47409 -14.34979 -13.99045 -13.57951 -13.41134 -13.23953 -12.94916 -12.71617 -12.40924 -12.10533 -11.99540 -11.60025 -11.37587 -11.04724 -10.88208 -10.46164 -10.31747 -10.11786 -10.00153 -9.58291 -8.90448 -7.23539 -5.77543 -3.12879 3.35195 3.37363 3.43645 3.74387 4.06074 4.31810 4.33544 4.57766 4.85444 4.98106 5.14648 5.21281 5.27215 5.40952 5.52537 5.61807 5.69196 5.78031 5.84454 5.98165 6.04027 6.11296 6.32799 6.39700 6.66657 6.78165 7.99185 8.41643 9.20771 9.93023 10.12940 11.41045 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.050579 B = 0.007022 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.452253 B = 3986.273946 C = 4264.894485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.163 3.837 11 C -0.103 4.103 12 C -0.111 4.111 13 C -0.155 4.155 14 C 0.287 3.713 15 F -0.200 7.200 16 F -0.209 7.209 17 C -0.158 4.158 18 C -0.113 4.113 19 H 0.259 0.741 20 H 0.360 0.640 21 H 0.029 0.971 22 H 0.028 0.972 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.558 -4.707 -0.654 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.402 5.402 10 C 0.035 3.965 11 C -0.122 4.122 12 C -0.149 4.149 13 C -0.193 4.193 14 C 0.251 3.749 15 F -0.181 7.181 16 F -0.190 7.190 17 C -0.196 4.196 18 C -0.150 4.150 19 H 0.069 0.931 20 H 0.193 0.807 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.341 -4.808 -0.682 18.008 hybrid contribution 0.690 1.219 -0.110 1.405 sum 18.031 -3.589 -0.792 18.402 Atomic orbital electron populations 1.69701 1.05100 1.25799 1.57664 1.24677 0.95238 0.97178 1.02127 0.86561 0.79215 0.85060 0.77790 1.21035 1.21703 1.20373 1.19076 0.80690 0.94751 1.42858 0.89211 1.42730 1.04025 1.02231 1.91190 1.20636 0.87723 0.89299 0.98794 1.21468 0.96867 0.96132 0.97695 1.21510 0.91647 0.98208 1.03552 1.22506 0.99302 1.02131 0.95351 1.21198 0.76422 0.91194 0.86126 1.92984 1.92491 1.74227 1.58373 1.92984 1.34009 1.94924 1.97043 1.22569 0.97512 0.94646 1.04868 1.21571 0.92171 1.02557 0.98706 0.93062 0.80689 0.95307 0.95384 0.90789 0.90307 0.90738 0.88954 0.89808 0.89794 0.89018 0.90723 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.76 -17.67 5.13 -59.91 -0.31 -17.97 16 10 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 11 C -0.10 -1.46 2.22 -90.62 -0.20 -1.67 16 12 C -0.11 -1.29 5.08 -26.73 -0.14 -1.42 16 13 C -0.15 -1.61 5.45 -26.73 -0.15 -1.75 16 14 C 0.29 3.46 2.10 -26.73 -0.06 3.41 16 15 F -0.20 -2.74 16.03 2.25 0.04 -2.71 16 16 F -0.21 -2.68 17.06 2.25 0.04 -2.65 16 17 C -0.16 -1.85 5.46 -26.71 -0.15 -2.00 16 18 C -0.11 -1.57 4.96 -26.71 -0.13 -1.70 16 19 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 20 H 0.36 8.13 4.71 -40.82 -0.19 7.94 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.89 7.80 -51.93 -0.41 0.49 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.07 7.80 -51.93 -0.41 0.67 16 31 H 0.08 1.25 7.18 -51.93 -0.37 0.87 16 LS Contribution 256.56 15.07 3.87 3.87 Total: -1.00 -31.06 256.56 -5.75 -36.81 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.35 Total: 3.24 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.09 Total: -9.18 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.47 Total: -46.61 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.07 Total: -5.35 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.06 -5.75 -36.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642837447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.907 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds