Wall clock time and date at job start Mon Mar 30 2020 02:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47034 * 270.00122 * 3 2 1 5 5 H 1.48495 * 109.46991 * 29.99959 * 3 2 1 6 6 H 1.48496 * 109.47333 * 150.00177 * 3 2 1 7 7 C 1.38818 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99716 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99870 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99897 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47203 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 175.00162 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47127 * 300.00449 * 13 12 11 15 15 F 1.39900 * 109.46764 * 299.99647 * 14 13 12 16 16 F 1.39903 * 109.46814 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47164 * 59.99836 * 14 13 12 18 18 C 1.52996 * 109.47302 * 295.00379 * 11 10 9 19 19 H 0.97000 * 119.99943 * 359.97438 * 1 2 3 20 20 H 0.97004 * 120.00227 * 0.02562 * 9 7 2 21 21 H 1.09002 * 109.46745 * 60.00248 * 10 9 7 22 22 H 1.08994 * 109.47346 * 300.00804 * 10 9 7 23 23 H 1.09001 * 109.46652 * 55.00507 * 11 10 9 24 24 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 25 25 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 26 26 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 27 27 H 1.08996 * 109.47853 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47045 * 180.02562 * 17 14 13 29 29 H 1.09001 * 109.47375 * 59.99966 * 17 14 13 30 30 H 1.08992 * 109.47554 * 299.99692 * 18 11 10 31 31 H 1.09004 * 109.47108 * 59.99942 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0024 12 6 6.3804 -3.5111 0.1233 13 6 7.8846 -3.2315 0.1227 14 6 8.2741 -2.5391 -1.1850 15 9 7.9534 -3.3683 -2.2651 16 9 9.6497 -2.2840 -1.1857 17 6 7.5101 -1.2195 -1.3106 18 6 6.0054 -1.4994 -1.3102 19 1 -0.4850 0.8400 0.0004 20 1 3.8646 -0.3621 -0.0007 21 1 3.8484 -3.0427 -0.8909 22 1 3.8490 -3.0424 0.8890 23 1 5.8665 -1.5452 0.8391 24 1 6.1031 -4.0041 1.0551 25 1 6.1302 -4.1573 -0.7181 26 1 8.1345 -2.5854 0.9642 27 1 8.4290 -4.1716 0.2118 28 1 7.7872 -0.7265 -2.2423 29 1 7.7599 -0.5735 -0.4689 30 1 5.7553 -2.1455 -2.1516 31 1 5.4610 -0.5593 -1.3997 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642837447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:31 Heat of formation + Delta-G solvation = -132.040794 kcal Electronic energy + Delta-G solvation = -15340.146811 eV Core-core repulsion = 12483.701364 eV Total energy + Delta-G solvation = -2856.445446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.93561 -47.93371 -39.37303 -36.29628 -33.64331 -32.10355 -31.18001 -26.91620 -24.50861 -23.76857 -22.28911 -20.97578 -19.66263 -18.32680 -17.75447 -17.18711 -16.59722 -16.02628 -15.50294 -15.23518 -14.86236 -14.54417 -14.47657 -14.30239 -14.07079 -13.63615 -13.34994 -13.22524 -12.99719 -12.74371 -12.51004 -12.16373 -12.04523 -11.86026 -11.55783 -11.40845 -11.05239 -10.92951 -9.28521 -8.02596 -5.35962 1.37153 1.41728 1.49058 2.48766 2.83948 3.16559 3.28604 3.35474 3.44670 3.62263 3.93016 4.14226 4.17802 4.21570 4.36391 4.46624 4.72208 4.80132 4.87092 4.91638 5.00610 5.02499 5.11747 5.17778 5.34886 5.49928 5.76382 6.21596 7.08773 7.84960 8.04863 9.19183 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.050579 B = 0.007022 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.452253 B = 3986.273946 C = 4264.894485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.237 4.237 8 H 0.054 0.946 9 N -0.757 5.757 10 C 0.158 3.842 11 C -0.093 4.093 12 C -0.106 4.106 13 C -0.149 4.149 14 C 0.281 3.719 15 F -0.213 7.213 16 F -0.212 7.212 17 C -0.153 4.153 18 C -0.112 4.112 19 H 0.258 0.742 20 H 0.367 0.633 21 H 0.020 0.980 22 H 0.027 0.973 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.194 -4.097 -0.057 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.782 3.218 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.171 1.171 7 C -0.368 4.368 8 H 0.072 0.928 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.112 4.112 12 C -0.144 4.144 13 C -0.186 4.186 14 C 0.245 3.755 15 F -0.194 7.194 16 F -0.193 7.193 17 C -0.191 4.191 18 C -0.149 4.149 19 H 0.067 0.933 20 H 0.201 0.799 21 H 0.038 0.962 22 H 0.046 0.954 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.117 0.883 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.082 0.918 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.034 -4.231 -0.085 20.476 hybrid contribution -0.168 0.907 -0.323 0.978 sum 19.865 -3.324 -0.408 20.146 Atomic orbital electron populations 1.69895 1.07263 1.26730 1.59740 1.25557 0.96155 1.01439 1.02607 0.85401 0.78849 0.79329 0.78211 1.20339 1.22293 1.17090 1.19063 0.82953 0.93437 1.41326 0.92806 1.42716 1.02337 1.04300 1.90930 1.20821 0.90580 0.87283 0.98148 1.21379 0.93570 0.97949 0.98282 1.21451 0.92354 0.96514 1.04069 1.22502 0.98031 1.03211 0.94888 1.21437 0.76209 0.91334 0.86526 1.92964 1.92578 1.74632 1.59211 1.92977 1.34310 1.94959 1.97070 1.22530 0.95526 0.94923 1.06094 1.21503 0.93807 1.01524 0.98103 0.93342 0.79907 0.96204 0.95449 0.89724 0.88891 0.91424 0.87026 0.88336 0.89281 0.87134 0.91839 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.54 13.97 21.65 0.30 -63.24 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 44.83 27.74 68.60 1.90 46.74 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 7 C -0.24 -13.57 10.47 84.04 0.88 -12.69 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 9 N -0.76 -34.64 5.13 -343.45 -1.76 -36.40 16 10 C 0.16 5.73 5.65 86.38 0.49 6.22 16 11 C -0.09 -2.42 2.22 -10.79 -0.02 -2.45 16 12 C -0.11 -2.16 5.08 30.59 0.16 -2.00 16 13 C -0.15 -2.54 5.45 30.60 0.17 -2.37 16 14 C 0.28 5.98 2.10 30.60 0.06 6.04 16 15 F -0.21 -5.44 16.03 44.97 0.72 -4.72 16 16 F -0.21 -4.84 17.06 44.97 0.77 -4.07 16 17 C -0.15 -3.13 5.46 30.61 0.17 -2.97 16 18 C -0.11 -2.88 4.96 30.61 0.15 -2.73 16 19 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 20 H 0.37 15.73 4.71 -92.71 -0.44 15.29 16 21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.48 7.80 -2.39 -0.02 1.47 16 26 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.76 7.80 -2.39 -0.02 1.74 16 31 H 0.07 1.93 7.18 -2.38 -0.02 1.91 16 Total: -1.00 -67.31 256.56 5.07 -62.25 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.62 Total: 15.84 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 2.52 Total: -16.39 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -1.46 Total: -99.64 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 1.49 Total: -8.79 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Total: -67.31 5.07 -62.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642837447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.794 kcal (2) G-P(sol) polarization free energy of solvation -67.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds