Wall clock time and date at job start Mon Mar 30 2020 03:11:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52995 * 115.55214 * 2 1
4 4 N 1.46901 * 109.47249 * 325.67421 * 3 2 1
5 5 C 1.46902 * 110.99931 * 179.97438 * 4 3 2
6 6 C 1.53001 * 109.47217 * 179.97438 * 5 4 3
7 7 C 1.50694 * 109.47168 * 180.02562 * 6 5 4
8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5
9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5
10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6
12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7
13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7
14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7
15 15 C 1.52993 * 117.49835 * 145.67691 * 2 1 3
16 16 C 1.52999 * 60.00256 * 107.50584 * 15 2 1
17 17 F 1.39894 * 117.50199 * 252.51035 * 16 15 2
18 18 F 1.39905 * 117.49594 * 107.48465 * 16 15 2
19 19 H 1.09001 * 109.46973 * 34.40864 * 1 2 3
20 20 H 1.08999 * 109.47846 * 154.41167 * 1 2 3
21 21 H 1.09002 * 109.47085 * 274.41813 * 1 2 3
22 22 H 1.08998 * 109.47459 * 205.67440 * 3 2 1
23 23 H 1.09005 * 109.46867 * 85.67182 * 3 2 1
24 24 H 1.00894 * 111.00417 * 303.95138 * 4 3 2
25 25 H 1.09002 * 109.46978 * 60.00184 * 5 4 3
26 26 H 1.08998 * 109.47251 * 299.99702 * 5 4 3
27 27 H 1.09007 * 109.46922 * 59.99765 * 6 5 4
28 28 H 1.09003 * 109.46836 * 300.00520 * 6 5 4
29 29 H 0.97001 * 119.99646 * 179.97438 * 10 9 7
30 30 H 1.09002 * 117.50194 * 215.00144 * 15 2 1
31 31 H 1.09010 * 117.50105 * 0.02562 * 15 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1899 1.3803 0.0000
4 7 1.3692 2.3155 -0.7810
5 6 1.9732 3.6544 -0.8026
6 6 1.0923 4.5981 -1.6239
7 6 1.7122 5.9714 -1.6465
8 1 2.6417 6.1531 -1.1274
9 6 1.0926 6.9962 -2.3300
10 7 -0.0390 6.7750 -2.9626
11 14 1.8607 8.6988 -2.3575
12 1 1.3514 9.4902 -1.2088
13 1 3.3374 8.5774 -2.2591
14 1 1.5037 9.3824 -3.6266
15 6 2.2364 -1.1208 0.7652
16 6 2.2368 -1.1210 -0.7648
17 9 1.4346 -2.0676 -1.4109
18 9 3.4371 -0.8052 -1.4105
19 1 -0.3633 0.8479 -0.5807
20 1 -0.3635 -0.9268 -0.4438
21 1 -0.3633 0.0792 1.0246
22 1 3.1822 1.3087 -0.4452
23 1 2.2766 1.7415 1.0248
24 1 1.2201 1.9707 -1.7174
25 1 2.9641 3.5988 -1.2531
26 1 2.0580 4.0312 0.2167
27 1 0.1011 4.6537 -1.1738
28 1 1.0078 4.2210 -2.6432
29 1 -0.4750 7.4960 -3.4431
30 1 3.1713 -0.8748 1.2688
31 1 1.6111 -1.8585 1.2683
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000689706283.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:21
Heat of formation + Delta-G solvation = -82.479918 kcal
Electronic energy + Delta-G solvation = -14701.822568 eV
Core-core repulsion = 11847.526242 eV
Total energy + Delta-G solvation = -2854.296325 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 219.113 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-48.69733 -47.37288 -38.02931 -35.16645 -32.79607 -29.75017 -28.25218 -25.69037
-23.31909 -22.67935 -20.61793 -19.58483 -17.70911 -16.51219 -16.30829 -15.99097
-15.31105 -14.44242 -14.30985 -14.08251 -13.91280 -13.63883 -13.23651 -12.87447
-12.71630 -12.34308 -12.17206 -12.00015 -11.32711 -11.09180 -10.91578 -10.67736
-10.44359 -10.03170 -9.72466 -9.39520 -9.15882 -8.35810 -7.90104 -6.00213
-4.02881 2.96698 3.00913 3.32233 3.38335 3.41501 4.02814 4.22412
4.45491 4.56396 4.88667 4.96596 5.27345 5.35894 5.42425 5.58014
5.67479 5.81150 5.89732 5.99070 6.28704 6.35410 6.45800 6.94816
7.40123 7.70315 7.77499 7.90288 8.06152 8.42273 9.04257 9.60989
11.11251
Molecular weight = 219.11amu
Principal moments of inertia in cm(-1)
A = 0.057323 B = 0.005040 C = 0.004957
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 488.339436 B = 5553.759519 C = 5647.391859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.108 4.108
3 C 0.087 3.913
4 N -0.686 5.686
5 C 0.065 3.935
6 C 0.025 3.975
7 C -0.522 4.522
8 H 0.054 0.946
9 C 0.058 3.942
10 N -0.893 5.893
11 Si 0.893 3.107
12 H -0.280 1.280
13 H -0.274 1.274
14 H -0.286 1.286
15 C -0.172 4.172
16 C 0.186 3.814
17 F -0.162 7.162
18 F -0.162 7.162
19 H 0.094 0.906
20 H 0.057 0.943
21 H 0.069 0.931
22 H 0.037 0.963
23 H 0.084 0.916
24 H 0.338 0.662
25 H 0.017 0.983
26 H 0.060 0.940
27 H 0.026 0.974
28 H 0.014 0.986
29 H 0.261 0.739
30 H 0.120 0.880
31 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.270 -15.341 6.891 17.132
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.110 4.110
3 C -0.043 4.043
4 N -0.317 5.317
5 C -0.063 4.063
6 C -0.012 4.012
7 C -0.561 4.561
8 H 0.072 0.928
9 C -0.143 4.143
10 N -0.532 5.532
11 Si 0.721 3.279
12 H -0.206 1.206
13 H -0.199 1.199
14 H -0.212 1.212
15 C -0.210 4.210
16 C 0.149 3.851
17 F -0.143 7.143
18 F -0.142 7.142
19 H 0.112 0.888
20 H 0.076 0.924
21 H 0.088 0.912
22 H 0.055 0.945
23 H 0.102 0.898
24 H 0.155 0.845
25 H 0.035 0.965
26 H 0.078 0.922
27 H 0.044 0.956
28 H 0.032 0.968
29 H 0.070 0.930
30 H 0.138 0.862
31 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 2.737 -15.114 7.259 16.989
hybrid contribution 1.298 0.620 -0.892 1.693
sum 4.035 -14.495 6.366 16.337
Atomic orbital electron populations
1.21342 0.89269 1.03618 1.03396 1.23031 0.98032 0.91776 0.98129
1.21458 0.94065 0.88521 1.00234 1.60639 1.48795 1.03082 1.19146
1.22182 0.96318 0.86961 1.00802 1.19070 0.95322 0.92409 0.94430
1.21170 1.07966 0.94684 1.32303 0.92751 1.25003 0.94950 0.98990
0.95399 1.69973 1.17005 1.32586 1.33671 0.86580 0.79545 0.84360
0.77417 1.20616 1.19931 1.21213 1.24455 1.04368 1.01374 0.90814
1.20378 0.81258 0.94890 0.88537 1.92985 1.72278 1.65363 1.83631
1.93004 1.44967 1.92637 1.83619 0.88751 0.92364 0.91229 0.94486
0.89756 0.84469 0.96487 0.92169 0.95571 0.96763 0.92971 0.86216
0.86072
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.39 9.70 37.16 0.36 -1.03 16
2 C -0.11 -1.30 2.50 -154.51 -0.39 -1.69 16
3 C 0.09 1.22 5.79 -3.83 -0.02 1.20 16
4 N -0.69 -11.88 5.02 -113.78 -0.57 -12.45 16
5 C 0.07 1.36 5.62 -3.82 -0.02 1.33 16
6 C 0.03 0.65 5.23 -27.89 -0.15 0.51 16
7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16
8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16
9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
10 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16
11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16
12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
15 C -0.17 -1.62 9.94 -26.74 -0.27 -1.89 16
16 C 0.19 2.34 5.14 -26.73 -0.14 2.20 16
17 F -0.16 -2.17 16.50 2.25 0.04 -2.13 16
18 F -0.16 -2.31 16.50 2.25 0.04 -2.27 16
19 H 0.09 1.28 6.70 -51.93 -0.35 0.93 16
20 H 0.06 0.64 7.10 -51.93 -0.37 0.27 16
21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
22 H 0.04 0.54 7.10 -51.93 -0.37 0.17 16
23 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16
24 H 0.34 5.86 8.61 -39.29 -0.34 5.52 16
25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
27 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16
28 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16
29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
30 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16
31 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16
LS Contribution 271.38 15.07 4.09 4.09
Total: -1.00 -30.00 271.38 -6.07 -36.07
By element:
Atomic # 1 Polarization: 3.55 SS G_CDS: -4.35 Total: -0.80 kcal
Atomic # 6 Polarization: -11.91 SS G_CDS: -1.03 Total: -12.94 kcal
Atomic # 7 Polarization: -38.84 SS G_CDS: 0.16 Total: -38.68 kcal
Atomic # 9 Polarization: -4.48 SS G_CDS: 0.07 Total: -4.40 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -30.00 -6.07 -36.07 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689706283.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.410 kcal
(2) G-P(sol) polarization free energy of solvation -30.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.411 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.070 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.480 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds