Wall clock time and date at job start Mon Mar 30 2020 03:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 115.55214 * 2 1 4 4 N 1.46901 * 109.47249 * 325.67421 * 3 2 1 5 5 C 1.46902 * 110.99931 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47217 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47168 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.52993 * 117.49835 * 145.67691 * 2 1 3 16 16 C 1.52999 * 60.00256 * 107.50584 * 15 2 1 17 17 F 1.39894 * 117.50199 * 252.51035 * 16 15 2 18 18 F 1.39905 * 117.49594 * 107.48465 * 16 15 2 19 19 H 1.09001 * 109.46973 * 34.40864 * 1 2 3 20 20 H 1.08999 * 109.47846 * 154.41167 * 1 2 3 21 21 H 1.09002 * 109.47085 * 274.41813 * 1 2 3 22 22 H 1.08998 * 109.47459 * 205.67440 * 3 2 1 23 23 H 1.09005 * 109.46867 * 85.67182 * 3 2 1 24 24 H 1.00894 * 111.00417 * 303.95138 * 4 3 2 25 25 H 1.09002 * 109.46978 * 60.00184 * 5 4 3 26 26 H 1.08998 * 109.47251 * 299.99702 * 5 4 3 27 27 H 1.09007 * 109.46922 * 59.99765 * 6 5 4 28 28 H 1.09003 * 109.46836 * 300.00520 * 6 5 4 29 29 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 30 30 H 1.09002 * 117.50194 * 215.00144 * 15 2 1 31 31 H 1.09010 * 117.50105 * 0.02562 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.3692 2.3155 -0.7810 5 6 1.9732 3.6544 -0.8026 6 6 1.0923 4.5981 -1.6239 7 6 1.7122 5.9714 -1.6465 8 1 2.6417 6.1531 -1.1274 9 6 1.0926 6.9962 -2.3300 10 7 -0.0390 6.7750 -2.9626 11 14 1.8607 8.6988 -2.3575 12 1 1.3514 9.4902 -1.2088 13 1 3.3374 8.5774 -2.2591 14 1 1.5037 9.3824 -3.6266 15 6 2.2364 -1.1208 0.7652 16 6 2.2368 -1.1210 -0.7648 17 9 1.4346 -2.0676 -1.4109 18 9 3.4371 -0.8052 -1.4105 19 1 -0.3633 0.8479 -0.5807 20 1 -0.3635 -0.9268 -0.4438 21 1 -0.3633 0.0792 1.0246 22 1 3.1822 1.3087 -0.4452 23 1 2.2766 1.7415 1.0248 24 1 1.2201 1.9707 -1.7174 25 1 2.9641 3.5988 -1.2531 26 1 2.0580 4.0312 0.2167 27 1 0.1011 4.6537 -1.1738 28 1 1.0078 4.2210 -2.6432 29 1 -0.4750 7.4960 -3.4431 30 1 3.1713 -0.8748 1.2688 31 1 1.6111 -1.8585 1.2683 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689706283.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:21 Heat of formation + Delta-G solvation = -82.479918 kcal Electronic energy + Delta-G solvation = -14701.822568 eV Core-core repulsion = 11847.526242 eV Total energy + Delta-G solvation = -2854.296325 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.69733 -47.37288 -38.02931 -35.16645 -32.79607 -29.75017 -28.25218 -25.69037 -23.31909 -22.67935 -20.61793 -19.58483 -17.70911 -16.51219 -16.30829 -15.99097 -15.31105 -14.44242 -14.30985 -14.08251 -13.91280 -13.63883 -13.23651 -12.87447 -12.71630 -12.34308 -12.17206 -12.00015 -11.32711 -11.09180 -10.91578 -10.67736 -10.44359 -10.03170 -9.72466 -9.39520 -9.15882 -8.35810 -7.90104 -6.00213 -4.02881 2.96698 3.00913 3.32233 3.38335 3.41501 4.02814 4.22412 4.45491 4.56396 4.88667 4.96596 5.27345 5.35894 5.42425 5.58014 5.67479 5.81150 5.89732 5.99070 6.28704 6.35410 6.45800 6.94816 7.40123 7.70315 7.77499 7.90288 8.06152 8.42273 9.04257 9.60989 11.11251 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.057323 B = 0.005040 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.339436 B = 5553.759519 C = 5647.391859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C 0.087 3.913 4 N -0.686 5.686 5 C 0.065 3.935 6 C 0.025 3.975 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.274 1.274 14 H -0.286 1.286 15 C -0.172 4.172 16 C 0.186 3.814 17 F -0.162 7.162 18 F -0.162 7.162 19 H 0.094 0.906 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.037 0.963 23 H 0.084 0.916 24 H 0.338 0.662 25 H 0.017 0.983 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.261 0.739 30 H 0.120 0.880 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -15.341 6.891 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.110 4.110 3 C -0.043 4.043 4 N -0.317 5.317 5 C -0.063 4.063 6 C -0.012 4.012 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.199 1.199 14 H -0.212 1.212 15 C -0.210 4.210 16 C 0.149 3.851 17 F -0.143 7.143 18 F -0.142 7.142 19 H 0.112 0.888 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.155 0.845 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.138 0.862 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.737 -15.114 7.259 16.989 hybrid contribution 1.298 0.620 -0.892 1.693 sum 4.035 -14.495 6.366 16.337 Atomic orbital electron populations 1.21342 0.89269 1.03618 1.03396 1.23031 0.98032 0.91776 0.98129 1.21458 0.94065 0.88521 1.00234 1.60639 1.48795 1.03082 1.19146 1.22182 0.96318 0.86961 1.00802 1.19070 0.95322 0.92409 0.94430 1.21170 1.07966 0.94684 1.32303 0.92751 1.25003 0.94950 0.98990 0.95399 1.69973 1.17005 1.32586 1.33671 0.86580 0.79545 0.84360 0.77417 1.20616 1.19931 1.21213 1.24455 1.04368 1.01374 0.90814 1.20378 0.81258 0.94890 0.88537 1.92985 1.72278 1.65363 1.83631 1.93004 1.44967 1.92637 1.83619 0.88751 0.92364 0.91229 0.94486 0.89756 0.84469 0.96487 0.92169 0.95571 0.96763 0.92971 0.86216 0.86072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.70 37.16 0.36 -1.03 16 2 C -0.11 -1.30 2.50 -154.51 -0.39 -1.69 16 3 C 0.09 1.22 5.79 -3.83 -0.02 1.20 16 4 N -0.69 -11.88 5.02 -113.78 -0.57 -12.45 16 5 C 0.07 1.36 5.62 -3.82 -0.02 1.33 16 6 C 0.03 0.65 5.23 -27.89 -0.15 0.51 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 C -0.17 -1.62 9.94 -26.74 -0.27 -1.89 16 16 C 0.19 2.34 5.14 -26.73 -0.14 2.20 16 17 F -0.16 -2.17 16.50 2.25 0.04 -2.13 16 18 F -0.16 -2.31 16.50 2.25 0.04 -2.27 16 19 H 0.09 1.28 6.70 -51.93 -0.35 0.93 16 20 H 0.06 0.64 7.10 -51.93 -0.37 0.27 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.54 7.10 -51.93 -0.37 0.17 16 23 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.34 5.86 8.61 -39.29 -0.34 5.52 16 25 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -30.00 271.38 -6.07 -36.07 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.35 Total: -0.80 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.03 Total: -12.94 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.16 Total: -38.68 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.07 Total: -4.40 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.00 -6.07 -36.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689706283.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.410 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds