Wall clock time and date at job start Mon Mar 30 2020 03:11:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52995 * 115.55214 * 2 1
4 4 N 1.46901 * 109.47249 * 325.67421 * 3 2 1
5 5 C 1.46902 * 110.99931 * 179.97438 * 4 3 2
6 6 C 1.53001 * 109.47217 * 179.97438 * 5 4 3
7 7 C 1.50694 * 109.47168 * 180.02562 * 6 5 4
8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5
9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5
10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6
11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6
12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7
13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7
14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7
15 15 C 1.52993 * 117.49835 * 145.67691 * 2 1 3
16 16 C 1.52999 * 60.00256 * 107.50584 * 15 2 1
17 17 F 1.39894 * 117.50199 * 252.51035 * 16 15 2
18 18 F 1.39905 * 117.49594 * 107.48465 * 16 15 2
19 19 H 1.09001 * 109.46973 * 34.40864 * 1 2 3
20 20 H 1.08999 * 109.47846 * 154.41167 * 1 2 3
21 21 H 1.09002 * 109.47085 * 274.41813 * 1 2 3
22 22 H 1.08998 * 109.47459 * 205.67440 * 3 2 1
23 23 H 1.09005 * 109.46867 * 85.67182 * 3 2 1
24 24 H 1.00894 * 111.00417 * 303.95138 * 4 3 2
25 25 H 1.09002 * 109.46978 * 60.00184 * 5 4 3
26 26 H 1.08998 * 109.47251 * 299.99702 * 5 4 3
27 27 H 1.09007 * 109.46922 * 59.99765 * 6 5 4
28 28 H 1.09003 * 109.46836 * 300.00520 * 6 5 4
29 29 H 0.97001 * 119.99646 * 179.97438 * 10 9 7
30 30 H 1.09002 * 117.50194 * 215.00144 * 15 2 1
31 31 H 1.09010 * 117.50105 * 0.02562 * 15 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1899 1.3803 0.0000
4 7 1.3692 2.3155 -0.7810
5 6 1.9732 3.6544 -0.8026
6 6 1.0923 4.5981 -1.6239
7 6 1.7122 5.9714 -1.6465
8 1 2.6417 6.1531 -1.1274
9 6 1.0926 6.9962 -2.3300
10 7 -0.0390 6.7750 -2.9626
11 14 1.8607 8.6988 -2.3575
12 1 1.3514 9.4902 -1.2088
13 1 3.3374 8.5774 -2.2591
14 1 1.5037 9.3824 -3.6266
15 6 2.2364 -1.1208 0.7652
16 6 2.2368 -1.1210 -0.7648
17 9 1.4346 -2.0676 -1.4109
18 9 3.4371 -0.8052 -1.4105
19 1 -0.3633 0.8479 -0.5807
20 1 -0.3635 -0.9268 -0.4438
21 1 -0.3633 0.0792 1.0246
22 1 3.1822 1.3087 -0.4452
23 1 2.2766 1.7415 1.0248
24 1 1.2201 1.9707 -1.7174
25 1 2.9641 3.5988 -1.2531
26 1 2.0580 4.0312 0.2167
27 1 0.1011 4.6537 -1.1738
28 1 1.0078 4.2210 -2.6432
29 1 -0.4750 7.4960 -3.4431
30 1 3.1713 -0.8748 1.2688
31 1 1.6111 -1.8585 1.2683
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689706283.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:20
Heat of formation + Delta-G solvation = -101.102538 kcal
Electronic energy + Delta-G solvation = -14702.630105 eV
Core-core repulsion = 11847.526242 eV
Total energy + Delta-G solvation = -2855.103863 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 219.113 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-49.68712 -48.37994 -39.08834 -36.69400 -34.80221 -31.52042 -29.28988 -27.30187
-25.03746 -23.55999 -22.44390 -20.59935 -18.72605 -18.48281 -17.51604 -16.98740
-16.78242 -16.39925 -15.64765 -15.20040 -15.06512 -14.67495 -14.38368 -14.23334
-14.09862 -13.84331 -13.48689 -13.16962 -12.91362 -12.82189 -12.50274 -12.30003
-11.91503 -11.64192 -11.36210 -11.16560 -10.64960 -10.55845 -9.34369 -8.20301
-6.31814 1.41107 1.42695 1.53617 2.05717 2.12760 2.40812 3.01177
3.13438 3.34062 3.63085 3.67402 3.91724 4.36832 4.46931 4.56965
4.60048 4.68550 4.79488 4.86901 4.97667 5.01865 5.06721 5.44067
5.46059 5.66990 5.77236 6.10115 6.23776 6.43302 6.85569 7.37631
8.91942
Molecular weight = 219.11amu
Principal moments of inertia in cm(-1)
A = 0.057323 B = 0.005040 C = 0.004957
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 488.339436 B = 5553.759519 C = 5647.391859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.118 4.118
3 C 0.089 3.911
4 N -0.688 5.688
5 C 0.083 3.917
6 C 0.031 3.969
7 C -0.545 4.545
8 H 0.061 0.939
9 C 0.000 4.000
10 N -0.932 5.932
11 Si 0.968 3.032
12 H -0.271 1.271
13 H -0.263 1.263
14 H -0.282 1.282
15 C -0.132 4.132
16 C 0.159 3.841
17 F -0.171 7.171
18 F -0.177 7.177
19 H 0.069 0.931
20 H 0.064 0.936
21 H 0.085 0.915
22 H 0.034 0.966
23 H 0.097 0.903
24 H 0.335 0.665
25 H 0.016 0.984
26 H 0.065 0.935
27 H -0.002 1.002
28 H -0.012 1.012
29 H 0.264 0.736
30 H 0.140 0.860
31 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.288 -15.632 8.399 18.256
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.120 4.120
3 C -0.041 4.041
4 N -0.318 5.318
5 C -0.045 4.045
6 C -0.007 4.007
7 C -0.584 4.584
8 H 0.079 0.921
9 C -0.198 4.198
10 N -0.572 5.572
11 Si 0.792 3.208
12 H -0.196 1.196
13 H -0.188 1.188
14 H -0.208 1.208
15 C -0.170 4.170
16 C 0.123 3.877
17 F -0.151 7.151
18 F -0.157 7.157
19 H 0.087 0.913
20 H 0.083 0.917
21 H 0.103 0.897
22 H 0.053 0.947
23 H 0.115 0.885
24 H 0.152 0.848
25 H 0.035 0.965
26 H 0.084 0.916
27 H 0.016 0.984
28 H 0.007 0.993
29 H 0.073 0.927
30 H 0.158 0.842
31 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 3.763 -15.426 8.781 18.145
hybrid contribution 0.947 0.657 -1.374 1.793
sum 4.710 -14.769 7.407 17.180
Atomic orbital electron populations
1.21291 0.89175 1.02834 1.03974 1.22959 0.98099 0.91063 0.99838
1.21502 0.93518 0.88972 1.00061 1.60561 1.49383 1.02415 1.19411
1.21796 0.95006 0.87890 0.99833 1.18924 0.94875 0.93233 0.93620
1.21623 1.08382 0.95934 1.32437 0.92068 1.25983 0.95361 1.03613
0.94795 1.70110 1.18529 1.34118 1.34469 0.85412 0.79011 0.78719
0.77671 1.19605 1.18762 1.20802 1.24624 1.04839 0.99262 0.88234
1.20823 0.80987 0.95496 0.90433 1.92961 1.72521 1.65570 1.84080
1.92967 1.45765 1.92832 1.84184 0.91252 0.91715 0.89668 0.94743
0.88468 0.84756 0.96538 0.91604 0.98383 0.99322 0.92740 0.84197
0.83395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.54 9.70 71.98 0.70 -1.84 16
2 C -0.12 -2.61 2.50 -52.19 -0.13 -2.74 16
3 C 0.09 2.36 5.79 86.30 0.50 2.86 16
4 N -0.69 -23.78 5.02 -513.88 -2.58 -26.36 16
5 C 0.08 3.47 5.62 86.30 0.49 3.96 16
6 C 0.03 1.65 5.23 29.85 0.16 1.81 16
7 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16
8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16
9 C 0.00 0.03 5.46 84.66 0.46 0.49 16
10 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16
11 Si 0.97 44.33 29.54 68.60 2.03 46.36 16
12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16
13 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16
14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
15 C -0.13 -2.02 9.94 30.59 0.30 -1.71 16
16 C 0.16 3.74 5.14 30.59 0.16 3.90 16
17 F -0.17 -4.38 16.50 44.97 0.74 -3.64 16
18 F -0.18 -4.90 16.50 44.97 0.74 -4.16 16
19 H 0.07 1.88 6.70 -2.39 -0.02 1.86 16
20 H 0.06 1.32 7.10 -2.39 -0.02 1.31 16
21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
22 H 0.03 0.95 7.10 -2.39 -0.02 0.94 16
23 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16
24 H 0.34 11.90 8.61 -89.70 -0.77 11.13 16
25 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16
26 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16
27 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16
28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
30 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16
31 H 0.15 1.53 8.14 -2.38 -0.02 1.51 16
Total: -1.00 -65.06 271.38 4.43 -60.63
By element:
Atomic # 1 Polarization: 8.08 SS G_CDS: 0.35 Total: 8.43 kcal
Atomic # 6 Polarization: -27.16 SS G_CDS: 2.87 Total: -24.29 kcal
Atomic # 7 Polarization: -81.04 SS G_CDS: -2.30 Total: -83.33 kcal
Atomic # 9 Polarization: -9.28 SS G_CDS: 1.48 Total: -7.80 kcal
Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal
Total: -65.06 4.43 -60.63 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689706283.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.471 kcal
(2) G-P(sol) polarization free energy of solvation -65.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.532 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.632 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.103 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds