Wall clock time and date at job start Mon Mar 30 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 115.55214 * 2 1 4 4 N 1.46901 * 109.47249 * 325.67421 * 3 2 1 5 5 C 1.46902 * 110.99931 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47217 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47168 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00563 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.52993 * 117.49835 * 145.67691 * 2 1 3 16 16 C 1.52999 * 60.00256 * 107.50584 * 15 2 1 17 17 F 1.39894 * 117.50199 * 252.51035 * 16 15 2 18 18 F 1.39905 * 117.49594 * 107.48465 * 16 15 2 19 19 H 1.09001 * 109.46973 * 34.40864 * 1 2 3 20 20 H 1.08999 * 109.47846 * 154.41167 * 1 2 3 21 21 H 1.09002 * 109.47085 * 274.41813 * 1 2 3 22 22 H 1.08998 * 109.47459 * 205.67440 * 3 2 1 23 23 H 1.09005 * 109.46867 * 85.67182 * 3 2 1 24 24 H 1.00894 * 111.00417 * 303.95138 * 4 3 2 25 25 H 1.09002 * 109.46978 * 60.00184 * 5 4 3 26 26 H 1.08998 * 109.47251 * 299.99702 * 5 4 3 27 27 H 1.09007 * 109.46922 * 59.99765 * 6 5 4 28 28 H 1.09003 * 109.46836 * 300.00520 * 6 5 4 29 29 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 30 30 H 1.09002 * 117.50194 * 215.00144 * 15 2 1 31 31 H 1.09010 * 117.50105 * 0.02562 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 1.3692 2.3155 -0.7810 5 6 1.9732 3.6544 -0.8026 6 6 1.0923 4.5981 -1.6239 7 6 1.7122 5.9714 -1.6465 8 1 2.6417 6.1531 -1.1274 9 6 1.0926 6.9962 -2.3300 10 7 -0.0390 6.7750 -2.9626 11 14 1.8607 8.6988 -2.3575 12 1 1.3514 9.4902 -1.2088 13 1 3.3374 8.5774 -2.2591 14 1 1.5037 9.3824 -3.6266 15 6 2.2364 -1.1208 0.7652 16 6 2.2368 -1.1210 -0.7648 17 9 1.4346 -2.0676 -1.4109 18 9 3.4371 -0.8052 -1.4105 19 1 -0.3633 0.8479 -0.5807 20 1 -0.3635 -0.9268 -0.4438 21 1 -0.3633 0.0792 1.0246 22 1 3.1822 1.3087 -0.4452 23 1 2.2766 1.7415 1.0248 24 1 1.2201 1.9707 -1.7174 25 1 2.9641 3.5988 -1.2531 26 1 2.0580 4.0312 0.2167 27 1 0.1011 4.6537 -1.1738 28 1 1.0078 4.2210 -2.6432 29 1 -0.4750 7.4960 -3.4431 30 1 3.1713 -0.8748 1.2688 31 1 1.6111 -1.8585 1.2683 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689706283.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:20 Heat of formation + Delta-G solvation = -101.102538 kcal Electronic energy + Delta-G solvation = -14702.630105 eV Core-core repulsion = 11847.526242 eV Total energy + Delta-G solvation = -2855.103863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.68712 -48.37994 -39.08834 -36.69400 -34.80221 -31.52042 -29.28988 -27.30187 -25.03746 -23.55999 -22.44390 -20.59935 -18.72605 -18.48281 -17.51604 -16.98740 -16.78242 -16.39925 -15.64765 -15.20040 -15.06512 -14.67495 -14.38368 -14.23334 -14.09862 -13.84331 -13.48689 -13.16962 -12.91362 -12.82189 -12.50274 -12.30003 -11.91503 -11.64192 -11.36210 -11.16560 -10.64960 -10.55845 -9.34369 -8.20301 -6.31814 1.41107 1.42695 1.53617 2.05717 2.12760 2.40812 3.01177 3.13438 3.34062 3.63085 3.67402 3.91724 4.36832 4.46931 4.56965 4.60048 4.68550 4.79488 4.86901 4.97667 5.01865 5.06721 5.44067 5.46059 5.66990 5.77236 6.10115 6.23776 6.43302 6.85569 7.37631 8.91942 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.057323 B = 0.005040 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.339436 B = 5553.759519 C = 5647.391859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C 0.089 3.911 4 N -0.688 5.688 5 C 0.083 3.917 6 C 0.031 3.969 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.000 4.000 10 N -0.932 5.932 11 Si 0.968 3.032 12 H -0.271 1.271 13 H -0.263 1.263 14 H -0.282 1.282 15 C -0.132 4.132 16 C 0.159 3.841 17 F -0.171 7.171 18 F -0.177 7.177 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.085 0.915 22 H 0.034 0.966 23 H 0.097 0.903 24 H 0.335 0.665 25 H 0.016 0.984 26 H 0.065 0.935 27 H -0.002 1.002 28 H -0.012 1.012 29 H 0.264 0.736 30 H 0.140 0.860 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -15.632 8.399 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C -0.041 4.041 4 N -0.318 5.318 5 C -0.045 4.045 6 C -0.007 4.007 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.198 4.198 10 N -0.572 5.572 11 Si 0.792 3.208 12 H -0.196 1.196 13 H -0.188 1.188 14 H -0.208 1.208 15 C -0.170 4.170 16 C 0.123 3.877 17 F -0.151 7.151 18 F -0.157 7.157 19 H 0.087 0.913 20 H 0.083 0.917 21 H 0.103 0.897 22 H 0.053 0.947 23 H 0.115 0.885 24 H 0.152 0.848 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.016 0.984 28 H 0.007 0.993 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.763 -15.426 8.781 18.145 hybrid contribution 0.947 0.657 -1.374 1.793 sum 4.710 -14.769 7.407 17.180 Atomic orbital electron populations 1.21291 0.89175 1.02834 1.03974 1.22959 0.98099 0.91063 0.99838 1.21502 0.93518 0.88972 1.00061 1.60561 1.49383 1.02415 1.19411 1.21796 0.95006 0.87890 0.99833 1.18924 0.94875 0.93233 0.93620 1.21623 1.08382 0.95934 1.32437 0.92068 1.25983 0.95361 1.03613 0.94795 1.70110 1.18529 1.34118 1.34469 0.85412 0.79011 0.78719 0.77671 1.19605 1.18762 1.20802 1.24624 1.04839 0.99262 0.88234 1.20823 0.80987 0.95496 0.90433 1.92961 1.72521 1.65570 1.84080 1.92967 1.45765 1.92832 1.84184 0.91252 0.91715 0.89668 0.94743 0.88468 0.84756 0.96538 0.91604 0.98383 0.99322 0.92740 0.84197 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.70 71.98 0.70 -1.84 16 2 C -0.12 -2.61 2.50 -52.19 -0.13 -2.74 16 3 C 0.09 2.36 5.79 86.30 0.50 2.86 16 4 N -0.69 -23.78 5.02 -513.88 -2.58 -26.36 16 5 C 0.08 3.47 5.62 86.30 0.49 3.96 16 6 C 0.03 1.65 5.23 29.85 0.16 1.81 16 7 C -0.55 -31.24 9.11 25.60 0.23 -31.01 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.00 0.03 5.46 84.66 0.46 0.49 16 10 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 11 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 C -0.13 -2.02 9.94 30.59 0.30 -1.71 16 16 C 0.16 3.74 5.14 30.59 0.16 3.90 16 17 F -0.17 -4.38 16.50 44.97 0.74 -3.64 16 18 F -0.18 -4.90 16.50 44.97 0.74 -4.16 16 19 H 0.07 1.88 6.70 -2.39 -0.02 1.86 16 20 H 0.06 1.32 7.10 -2.39 -0.02 1.31 16 21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.03 0.95 7.10 -2.39 -0.02 0.94 16 23 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 24 H 0.34 11.90 8.61 -89.70 -0.77 11.13 16 25 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.15 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -65.06 271.38 4.43 -60.63 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.35 Total: 8.43 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 2.87 Total: -24.29 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.30 Total: -83.33 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.48 Total: -7.80 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -65.06 4.43 -60.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689706283.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.471 kcal (2) G-P(sol) polarization free energy of solvation -65.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds