Wall clock time and date at job start Mon Mar 30 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46828 * 2 1 4 4 H 1.09000 * 109.47319 * 60.35173 * 3 2 1 5 5 C 1.50697 * 109.46970 * 180.35785 * 3 2 1 6 6 H 1.07998 * 120.00305 * 119.72191 * 5 3 2 7 7 C 1.37884 * 119.99680 * 299.99722 * 5 3 2 8 8 N 1.31510 * 120.00012 * 359.72306 * 7 5 3 9 9 Si 1.86801 * 119.99997 * 179.72684 * 7 5 3 10 10 H 1.48500 * 109.47303 * 89.99492 * 9 7 5 11 11 H 1.48497 * 109.47081 * 210.00322 * 9 7 5 12 12 H 1.48507 * 109.46654 * 330.00071 * 9 7 5 13 13 N 1.46899 * 109.46951 * 300.35642 * 3 2 1 14 14 C 1.46900 * 111.00139 * 136.10181 * 13 3 2 15 15 C 1.53008 * 115.54664 * 280.36485 * 14 13 3 16 16 F 1.39899 * 109.46998 * 295.95688 * 15 14 13 17 17 F 1.39905 * 109.46785 * 55.95504 * 15 14 13 18 18 C 1.52998 * 117.50288 * 134.66107 * 14 13 3 19 19 C 1.52992 * 117.50238 * 66.03449 * 14 13 3 20 20 H 1.09001 * 109.46838 * 57.17893 * 1 2 3 21 21 H 1.09008 * 109.46839 * 177.17044 * 1 2 3 22 22 H 1.08999 * 109.47252 * 297.17551 * 1 2 3 23 23 H 1.08996 * 109.47166 * 239.99898 * 2 1 3 24 24 H 1.08999 * 109.46713 * 119.99289 * 2 1 3 25 25 H 0.96999 * 119.99876 * 179.97438 * 8 7 5 26 26 H 1.00900 * 111.00067 * 12.14230 * 13 3 2 27 27 H 1.09000 * 109.47002 * 175.95504 * 15 14 13 28 28 H 1.08998 * 117.49365 * 359.97438 * 18 14 13 29 29 H 1.08995 * 117.50117 * 145.02129 * 18 14 13 30 30 H 1.08997 * 117.50438 * 214.98073 * 19 14 13 31 31 H 1.09001 * 117.49940 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6818 1.9546 0.8931 5 6 3.5470 1.4426 -0.0089 6 1 4.0822 1.9080 -0.8233 7 6 4.2424 0.8434 1.0200 8 7 3.5906 0.2767 2.0117 9 14 6.1103 0.8368 1.0052 10 1 6.6152 2.0478 1.7008 11 1 6.6065 -0.3773 1.7017 12 1 6.5942 0.8345 -0.3988 13 7 1.5433 2.1374 -1.1951 14 6 1.0591 3.4829 -0.8586 15 6 -0.3414 3.5460 -0.2455 16 9 -1.2798 3.0925 -1.1787 17 9 -0.3883 2.7362 0.8944 18 6 1.4838 4.6353 -1.7710 19 6 2.0898 4.5036 -0.3723 20 1 -0.3633 0.5570 -0.8636 21 1 -0.3633 -1.0265 -0.0507 22 1 -0.3634 0.4693 0.9142 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8901 25 1 4.0799 -0.1451 2.7353 26 1 0.8242 1.5986 -1.6540 27 1 -0.5712 4.5752 0.0302 28 1 2.1229 4.3952 -2.6206 29 1 0.7656 5.4387 -1.9346 30 1 1.7703 5.2203 0.3842 31 1 3.1272 4.1767 -0.3015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697382781.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:56 Heat of formation + Delta-G solvation = -100.482763 kcal Electronic energy + Delta-G solvation = -16003.997490 eV Core-core repulsion = 13148.920502 eV Total energy + Delta-G solvation = -2855.076987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.85345 -47.87297 -39.25062 -36.59917 -33.92049 -31.34296 -28.65306 -27.47581 -24.78102 -23.31556 -21.50264 -20.96296 -18.47268 -18.34928 -18.03121 -17.73302 -16.63509 -16.13832 -15.38471 -15.02195 -14.86073 -14.57051 -14.30565 -14.14615 -13.65156 -13.19931 -13.11596 -12.79263 -12.59945 -12.50188 -12.28868 -12.04729 -11.82449 -11.50071 -11.44067 -11.05558 -10.77252 -10.40224 -9.05215 -8.03067 -6.13597 1.41672 1.43317 1.53404 2.44974 2.72945 2.86688 3.21323 3.30947 3.43365 3.76810 3.89885 4.29974 4.47008 4.49713 4.51070 4.63751 4.69145 4.82422 5.09017 5.12685 5.26112 5.32942 5.41978 5.60721 5.77584 5.84818 6.35040 6.57809 6.83838 6.98514 7.54098 9.00683 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.033168 B = 0.011153 C = 0.009393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.986303 B = 2509.851469 C = 2980.336234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.000 1.000 5 C -0.501 4.501 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.648 5.648 14 C -0.047 4.047 15 C 0.266 3.734 16 F -0.211 7.211 17 F -0.215 7.215 18 C -0.118 4.118 19 C -0.147 4.147 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.041 0.959 23 H 0.031 0.969 24 H 0.067 0.933 25 H 0.258 0.742 26 H 0.330 0.670 27 H 0.148 0.852 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.603 8.259 -4.683 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.119 3.881 4 H 0.017 0.983 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.278 5.278 14 C -0.141 4.141 15 C 0.211 3.789 16 F -0.193 7.193 17 F -0.196 7.196 18 C -0.156 4.156 19 C -0.184 4.184 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.150 0.850 27 H 0.165 0.835 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.954 8.321 -4.717 11.267 hybrid contribution 0.150 -0.881 0.797 1.198 sum -5.803 7.440 -3.921 10.218 Atomic orbital electron populations 1.21800 0.96660 1.00742 1.00345 1.21762 0.93768 1.00159 1.01022 1.18971 0.93387 0.89429 0.86301 0.98268 1.21468 0.92291 1.34438 1.05848 0.93165 1.25673 1.02360 0.95525 0.95402 1.70023 1.36374 1.38690 1.11173 0.85622 0.81037 0.77340 0.77969 1.20215 1.21268 1.19683 1.60519 1.38023 1.01573 1.27725 1.22573 0.92453 0.90759 1.08305 1.22401 0.87565 0.93779 0.75183 1.92925 1.67676 1.91668 1.66993 1.92963 1.96893 1.77207 1.52583 1.23167 1.02384 0.96207 0.93813 1.23032 0.98204 0.98620 0.98555 0.93578 0.92659 0.94015 0.95004 0.91447 0.93251 0.85047 0.83539 0.88171 0.85136 0.86589 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 9.04 71.98 0.65 -5.03 16 2 C -0.13 -6.33 5.23 30.60 0.16 -6.17 16 3 C 0.23 11.43 1.51 44.17 0.07 11.50 16 4 H 0.00 -0.02 6.16 -2.39 -0.01 -0.04 16 5 C -0.50 -27.80 8.32 25.60 0.21 -27.58 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.45 5.30 84.66 0.45 0.90 16 8 N -0.92 -53.84 11.33 21.45 0.24 -53.59 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 N -0.65 -27.49 6.43 -452.10 -2.91 -30.39 16 14 C -0.05 -1.60 1.73 3.53 0.01 -1.60 16 15 C 0.27 8.19 5.22 71.98 0.38 8.56 16 16 F -0.21 -6.63 17.21 44.97 0.77 -5.85 16 17 F -0.22 -8.30 13.29 44.97 0.60 -7.71 16 18 C -0.12 -3.09 10.18 30.59 0.31 -2.78 16 19 C -0.15 -4.68 9.81 30.59 0.30 -4.38 16 20 H 0.05 1.76 6.30 -2.39 -0.02 1.75 16 21 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 22 H 0.04 1.78 6.75 -2.39 -0.02 1.76 16 23 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 3.76 6.09 -2.39 -0.01 3.74 16 25 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 26 H 0.33 13.52 6.11 -89.69 -0.55 12.97 16 27 H 0.15 3.13 8.10 -2.39 -0.02 3.11 16 28 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.09 3.35 7.62 -2.39 -0.02 3.33 16 Total: -1.00 -62.85 259.44 3.85 -59.00 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.58 Total: 18.70 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 2.53 Total: -26.58 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.66 Total: -83.99 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 1.37 Total: -13.56 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -62.85 3.85 -59.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697382781.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.486 kcal (2) G-P(sol) polarization free energy of solvation -62.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds