Wall clock time and date at job start Mon Mar 30 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 C 1.53000 * 115.54729 * 34.42037 * 13 12 11 15 15 F 1.39904 * 109.47185 * 85.58204 * 14 13 12 16 16 F 1.39894 * 109.46795 * 205.57943 * 14 13 12 17 17 C 1.53001 * 117.50063 * 248.74840 * 13 12 11 18 18 C 1.52995 * 117.49652 * 180.08895 * 13 12 11 19 19 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 21 21 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 22 22 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 23 23 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 26 26 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 27 27 H 1.09004 * 109.47055 * 325.58329 * 14 13 12 28 28 H 1.08996 * 117.49666 * 359.97438 * 17 13 12 29 29 H 1.08998 * 117.49804 * 145.02304 * 17 13 12 30 30 H 1.08999 * 117.49744 * 214.98374 * 18 13 12 31 31 H 1.08997 * 117.50572 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 7.5097 -4.0607 -0.0033 14 6 8.2006 -2.9392 0.7751 15 9 8.3021 -3.3009 2.1228 16 9 9.4805 -2.7282 0.2513 17 6 8.2012 -4.5725 -1.2685 18 6 8.1796 -5.4362 -0.0049 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6804 0.8888 21 1 3.8744 -0.6801 -0.8912 22 1 3.6578 -3.1506 -0.8907 23 1 3.6585 -3.1501 0.8892 24 1 5.9156 -2.1223 0.8873 25 1 5.9141 -2.1230 -0.8927 26 1 5.6650 -4.5384 -0.7822 27 1 7.6165 -2.0231 0.6877 28 1 7.5666 -4.8805 -2.0993 29 1 9.1486 -4.1106 -1.5461 30 1 9.1128 -5.5421 0.5483 31 1 7.5308 -6.3121 -0.0042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697382897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:33 Heat of formation + Delta-G solvation = -86.190310 kcal Electronic energy + Delta-G solvation = -14812.547964 eV Core-core repulsion = 11958.090744 eV Total energy + Delta-G solvation = -2854.457220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.08626 -47.05574 -38.52564 -35.09257 -32.83405 -30.80794 -27.32057 -26.45763 -22.78623 -22.45536 -20.41609 -20.09097 -17.79174 -17.23176 -16.99729 -16.53311 -15.47358 -14.88935 -14.33462 -14.20622 -13.93252 -13.54397 -13.39983 -12.82258 -12.70479 -12.38966 -12.21783 -11.74777 -11.50721 -11.25781 -10.97365 -10.81263 -10.40047 -10.01146 -9.79109 -9.65333 -9.21982 -8.56266 -8.35720 -6.06301 -4.04670 3.28295 3.29335 3.36246 3.38924 3.43164 3.97314 4.06920 4.22033 4.42846 4.50688 5.02467 5.06343 5.22510 5.27315 5.40463 5.41543 5.54350 5.65356 5.86435 5.97120 6.39837 6.43120 6.80749 6.92514 7.21300 7.26154 7.38443 7.76540 8.51727 8.98785 9.55863 11.07189 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.005879 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.423465 B = 4761.588115 C = 5059.509802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.098 4.098 11 C 0.043 3.957 12 N -0.640 5.640 13 C -0.013 4.013 14 C 0.294 3.706 15 F -0.194 7.194 16 F -0.202 7.202 17 C -0.196 4.196 18 C -0.149 4.149 19 H 0.263 0.737 20 H 0.016 0.984 21 H 0.010 0.990 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.352 0.648 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.508 -7.171 -1.376 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.136 4.136 11 C -0.084 4.084 12 N -0.270 5.270 13 C -0.106 4.106 14 C 0.240 3.760 15 F -0.176 7.176 16 F -0.184 7.184 17 C -0.236 4.236 18 C -0.187 4.187 19 H 0.073 0.927 20 H 0.035 0.965 21 H 0.028 0.972 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.172 0.828 27 H 0.140 0.860 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.297 -7.112 -0.658 18.714 hybrid contribution 0.584 1.128 -0.874 1.541 sum 17.881 -5.985 -1.532 18.918 Atomic orbital electron populations 1.69915 1.06309 1.26901 1.51097 1.25038 0.94739 0.99180 0.94568 0.86775 0.80370 0.83653 0.78443 1.20346 1.21331 1.19041 1.21122 0.89400 0.94523 1.50833 0.90968 1.19549 0.97349 0.91984 0.96219 1.21443 0.90124 1.00089 1.01974 1.22382 0.98627 0.87353 1.00081 1.60378 1.01458 1.15475 1.49731 1.22525 0.90107 0.96619 1.01362 1.21259 0.80461 0.98553 0.75700 1.93005 1.96341 1.93583 1.34623 1.92952 1.43034 1.95829 1.86556 1.23725 1.03625 1.04180 0.92025 1.23129 1.01993 0.93608 0.99976 0.92713 0.96526 0.97170 0.92709 0.91576 0.91123 0.94813 0.82791 0.85962 0.87833 0.87675 0.88077 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.01 -0.30 4.04 -27.89 -0.11 -0.42 16 10 C -0.10 -1.86 5.41 -26.74 -0.14 -2.01 16 11 C 0.04 0.66 4.70 -3.83 -0.02 0.64 16 12 N -0.64 -8.53 6.78 -99.97 -0.68 -9.21 16 13 C -0.01 -0.15 2.66 -131.60 -0.35 -0.50 16 14 C 0.29 3.66 4.96 37.16 0.18 3.84 16 15 F -0.19 -2.74 17.29 2.25 0.04 -2.70 16 16 F -0.20 -2.50 15.91 2.25 0.04 -2.46 16 17 C -0.20 -1.92 9.62 -26.69 -0.26 -2.18 16 18 C -0.15 -1.52 10.11 -26.70 -0.27 -1.79 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 21 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.07 1.06 6.35 -51.93 -0.33 0.73 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.35 4.23 8.52 -39.29 -0.33 3.89 16 27 H 0.12 1.42 5.61 -51.93 -0.29 1.13 16 28 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.10 1.00 7.22 -51.93 -0.37 0.63 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 266.37 15.07 4.01 4.01 Total: -1.00 -30.40 266.37 -6.10 -36.50 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.22 Total: -0.24 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.40 Total: -15.70 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.10 Total: -36.31 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.07 Total: -5.16 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.40 -6.10 -36.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697382897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.695 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds