Wall clock time and date at job start Mon Mar 30 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 C 1.53000 * 115.54729 * 34.42037 * 13 12 11 15 15 F 1.39904 * 109.47185 * 85.58204 * 14 13 12 16 16 F 1.39894 * 109.46795 * 205.57943 * 14 13 12 17 17 C 1.53001 * 117.50063 * 248.74840 * 13 12 11 18 18 C 1.52995 * 117.49652 * 180.08895 * 13 12 11 19 19 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 21 21 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 22 22 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 23 23 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 26 26 H 1.00908 * 110.99847 * 56.04959 * 12 11 10 27 27 H 1.09004 * 109.47055 * 325.58329 * 14 13 12 28 28 H 1.08996 * 117.49666 * 359.97438 * 17 13 12 29 29 H 1.08998 * 117.49804 * 145.02304 * 17 13 12 30 30 H 1.08999 * 117.49744 * 214.98374 * 18 13 12 31 31 H 1.08997 * 117.50572 * 359.97438 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 7 6.0412 -4.0215 -0.0015 13 6 7.5097 -4.0607 -0.0033 14 6 8.2006 -2.9392 0.7751 15 9 8.3021 -3.3009 2.1228 16 9 9.4805 -2.7282 0.2513 17 6 8.2012 -4.5725 -1.2685 18 6 8.1796 -5.4362 -0.0049 19 1 -0.4851 0.8401 0.0004 20 1 3.8752 -0.6804 0.8888 21 1 3.8744 -0.6801 -0.8912 22 1 3.6578 -3.1506 -0.8907 23 1 3.6585 -3.1501 0.8892 24 1 5.9156 -2.1223 0.8873 25 1 5.9141 -2.1230 -0.8927 26 1 5.6650 -4.5384 -0.7822 27 1 7.6165 -2.0231 0.6877 28 1 7.5666 -4.8805 -2.0993 29 1 9.1486 -4.1106 -1.5461 30 1 9.1128 -5.5421 0.5483 31 1 7.5308 -6.3121 -0.0042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697382897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:33 Heat of formation + Delta-G solvation = -106.354133 kcal Electronic energy + Delta-G solvation = -14813.422333 eV Core-core repulsion = 11958.090744 eV Total energy + Delta-G solvation = -2855.331589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.05576 -48.04158 -39.46316 -36.53695 -34.68787 -32.46371 -28.40075 -28.03113 -24.20177 -23.44444 -21.92776 -21.18225 -18.96526 -18.73513 -18.20368 -17.71062 -16.60508 -16.33558 -15.89531 -15.39948 -14.99666 -14.79941 -14.50579 -14.34839 -14.06158 -13.80059 -13.59869 -12.92797 -12.83652 -12.47926 -12.33828 -12.13437 -11.79599 -11.59333 -11.47962 -11.26976 -11.17401 -10.75817 -9.33774 -8.28806 -6.33331 1.36592 1.39191 1.50761 2.36964 2.44717 2.51042 3.00731 3.06788 3.15875 3.34689 3.68558 4.04234 4.14199 4.18046 4.28849 4.40321 4.62573 4.66957 4.85156 4.90377 4.91611 5.08252 5.12303 5.49620 5.58926 5.66145 5.86002 6.23858 6.30289 6.75456 7.31425 8.88216 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.043985 B = 0.005879 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.423465 B = 4761.588115 C = 5059.509802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.534 4.534 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.090 4.090 11 C 0.056 3.944 12 N -0.647 5.647 13 C -0.032 4.032 14 C 0.291 3.709 15 F -0.207 7.207 16 F -0.202 7.202 17 C -0.179 4.179 18 C -0.145 4.145 19 H 0.266 0.734 20 H 0.021 0.979 21 H 0.023 0.977 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.359 0.641 27 H 0.131 0.869 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.822 -6.654 -1.935 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.128 4.128 11 C -0.073 4.073 12 N -0.278 5.278 13 C -0.125 4.125 14 C 0.237 3.763 15 F -0.188 7.188 16 F -0.183 7.183 17 C -0.218 4.218 18 C -0.183 4.183 19 H 0.075 0.925 20 H 0.039 0.961 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.180 0.820 27 H 0.148 0.852 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.636 -6.623 -1.223 20.759 hybrid contribution -0.184 0.859 -0.702 1.125 sum 19.452 -5.763 -1.925 20.379 Atomic orbital electron populations 1.70080 1.08440 1.28179 1.52758 1.26074 0.95636 1.03725 0.94108 0.85622 0.79580 0.77956 0.79270 1.18999 1.21191 1.16653 1.21526 0.92348 0.93046 1.50323 0.95198 1.19505 0.93756 0.94940 0.96752 1.21239 0.93183 0.97187 1.01179 1.22115 0.95426 0.88835 1.00901 1.60279 1.02723 1.14308 1.50485 1.22541 0.89116 0.97582 1.03287 1.21393 0.80582 0.99209 0.75147 1.92980 1.96417 1.93724 1.35716 1.92950 1.43066 1.95856 1.86465 1.23776 1.03516 1.02827 0.91685 1.23215 1.01898 0.93015 1.00185 0.92529 0.96056 0.95882 0.92868 0.93177 0.90881 0.93429 0.82014 0.85187 0.86536 0.87186 0.87780 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 7 C -0.53 -30.81 9.66 25.60 0.25 -30.57 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 9 C -0.01 -0.52 4.04 29.84 0.12 -0.40 16 10 C -0.09 -3.33 5.41 30.59 0.17 -3.16 16 11 C 0.06 1.56 4.70 86.30 0.41 1.96 16 12 N -0.65 -15.86 6.78 -470.18 -3.19 -19.05 16 13 C -0.03 -0.69 2.66 3.52 0.01 -0.68 16 14 C 0.29 6.59 4.96 71.98 0.36 6.95 16 15 F -0.21 -5.53 17.29 44.97 0.78 -4.75 16 16 F -0.20 -4.52 15.91 44.97 0.72 -3.81 16 17 C -0.18 -2.96 9.62 30.62 0.29 -2.67 16 18 C -0.15 -2.60 10.11 30.62 0.31 -2.29 16 19 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 20 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 21 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 22 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.07 2.02 6.35 -2.39 -0.02 2.01 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.36 7.83 8.52 -89.69 -0.76 7.06 16 27 H 0.13 2.71 5.61 -2.38 -0.01 2.70 16 28 H 0.12 1.65 8.09 -2.39 -0.02 1.63 16 29 H 0.11 1.75 7.22 -2.39 -0.02 1.73 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -65.62 266.37 3.17 -62.45 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.31 Total: 9.78 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 2.37 Total: -30.34 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.89 Total: -78.96 kcal Atomic # 9 Polarization: -10.05 SS G_CDS: 1.49 Total: -8.56 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -65.62 3.17 -62.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697382897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.906 kcal (2) G-P(sol) polarization free energy of solvation -65.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds