Wall clock time and date at job start Mon Mar 30 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48498 * 109.46856 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.46872 * 29.99410 * 3 2 1 6 6 H 1.48501 * 109.47227 * 149.99820 * 3 2 1 7 7 C 1.37885 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46891 * 180.02562 * 10 9 7 12 12 N 1.46906 * 109.47053 * 179.97438 * 11 10 9 13 13 C 1.46895 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53780 * 113.61556 * 254.13468 * 13 12 11 15 15 C 1.53956 * 87.01962 * 220.05322 * 14 13 12 16 16 F 1.39904 * 113.53392 * 270.80707 * 15 14 13 17 17 F 1.39903 * 113.66714 * 139.93494 * 15 14 13 18 18 C 1.53777 * 87.11345 * 25.36335 * 15 14 13 19 19 H 0.96997 * 120.00191 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46980 * 60.00263 * 9 7 2 21 21 H 1.09004 * 109.47113 * 300.00244 * 9 7 2 22 22 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 23 23 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 24 24 H 1.08992 * 109.47056 * 59.99654 * 11 10 9 25 25 H 1.09004 * 109.47006 * 299.99770 * 11 10 9 26 26 H 1.00899 * 110.99484 * 303.95475 * 12 11 10 27 27 H 1.08995 * 112.85551 * 25.33256 * 13 12 11 28 28 H 1.09003 * 113.61203 * 334.56770 * 14 13 12 29 29 H 1.09000 * 113.61721 * 105.46769 * 14 13 12 30 30 H 1.08999 * 113.61131 * 220.09380 * 18 15 14 31 31 H 1.08997 * 113.69268 * 89.20253 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0022 12 7 6.0412 -4.0216 0.0027 13 6 7.5096 -4.0608 0.0033 14 6 8.1157 -4.4625 -1.3517 15 6 9.1398 -5.2927 -0.5566 16 9 10.2872 -4.5745 -0.2029 17 9 9.4306 -6.5318 -1.1374 18 6 8.0907 -5.3691 0.5651 19 1 -0.4850 0.8400 -0.0004 20 1 3.8745 -0.6801 0.8912 21 1 3.8752 -0.6804 -0.8889 22 1 3.6585 -3.1503 -0.8893 23 1 3.6578 -3.1506 0.8908 24 1 5.9140 -2.1231 0.8926 25 1 5.9155 -2.1224 -0.8873 26 1 5.6650 -4.5378 0.7838 27 1 7.9568 -3.1645 0.4330 28 1 7.4481 -5.0658 -1.9669 29 1 8.5572 -3.6285 -1.8971 30 1 8.5122 -5.2658 1.5649 31 1 7.4157 -6.2203 0.4762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697472354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:26 Heat of formation + Delta-G solvation = -93.550188 kcal Electronic energy + Delta-G solvation = -14438.118252 eV Core-core repulsion = 11583.341884 eV Total energy + Delta-G solvation = -2854.776368 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.98200 -47.32448 -38.63452 -35.23227 -32.91872 -30.92977 -26.80347 -26.41976 -23.66416 -22.08525 -20.54514 -19.80267 -17.75960 -16.81056 -16.75578 -16.46124 -15.51013 -15.12600 -14.33245 -14.20620 -14.18570 -13.67708 -13.60111 -12.77312 -12.73845 -12.44337 -12.20930 -11.62834 -11.56349 -11.34106 -10.96500 -10.82222 -10.63309 -9.98289 -9.76775 -9.60793 -9.19137 -8.54731 -8.46938 -6.04822 -4.02855 3.26267 3.29864 3.37237 3.40280 3.58622 3.94936 4.08098 4.25259 4.44401 4.58018 5.07315 5.22194 5.28416 5.29072 5.42148 5.53390 5.58696 5.67875 5.89506 6.10015 6.48714 6.51066 6.87483 7.06873 7.30238 7.34893 7.44636 7.79047 8.53839 9.00530 9.57679 11.08760 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.069335 B = 0.004511 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.739455 B = 6206.087403 C = 6427.945170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.054 3.946 12 N -0.674 5.674 13 C 0.066 3.934 14 C -0.152 4.152 15 C 0.251 3.749 16 F -0.183 7.183 17 F -0.191 7.191 18 C -0.169 4.169 19 H 0.263 0.737 20 H 0.013 0.987 21 H 0.011 0.989 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.345 0.655 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.889 -9.110 0.416 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.074 4.074 12 N -0.305 5.305 13 C -0.045 4.045 14 C -0.191 4.191 15 C 0.214 3.786 16 F -0.164 7.164 17 F -0.172 7.172 18 C -0.207 4.207 19 H 0.073 0.927 20 H 0.032 0.968 21 H 0.030 0.970 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.165 0.835 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.710 -9.068 -0.260 19.898 hybrid contribution 0.765 1.145 0.868 1.628 sum 18.475 -7.923 0.608 20.112 Atomic orbital electron populations 1.69913 1.06314 1.26874 1.51229 1.25043 0.94729 0.99181 0.94598 0.86767 0.80285 0.83630 0.78503 1.20276 1.21410 1.19120 1.21146 0.89495 0.94474 1.50694 0.91016 1.19544 0.97213 0.92202 0.96146 1.21455 0.90858 0.99815 1.01687 1.22256 0.97841 0.87197 1.00116 1.60571 1.04392 1.15737 1.49808 1.22744 0.90094 0.96318 0.95365 1.24248 0.95721 1.00304 0.98783 1.21980 0.81798 0.78282 0.96503 1.93010 1.53290 1.77497 1.92565 1.93005 1.94826 1.43849 1.85536 1.24353 0.96852 1.00886 0.98626 0.92745 0.96831 0.97027 0.91847 0.92921 0.95395 0.91260 0.83541 0.89806 0.86153 0.89204 0.89030 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -1.91 5.41 -26.73 -0.14 -2.05 16 11 C 0.05 0.82 5.54 -3.82 -0.02 0.80 16 12 N -0.67 -8.34 6.55 -105.86 -0.69 -9.04 16 13 C 0.07 0.68 4.10 -66.90 -0.27 0.41 16 14 C -0.15 -1.52 7.68 -25.83 -0.20 -1.72 16 15 C 0.25 2.60 3.28 -25.83 -0.08 2.52 16 16 F -0.18 -2.11 17.38 2.25 0.04 -2.07 16 17 F -0.19 -2.22 17.41 2.25 0.04 -2.18 16 18 C -0.17 -1.48 7.46 -25.92 -0.19 -1.68 16 19 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 20 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 21 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.03 0.41 8.13 -51.93 -0.42 -0.01 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.35 3.89 8.56 -39.29 -0.34 3.56 16 27 H 0.08 0.88 7.88 -51.93 -0.41 0.47 16 28 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 268.80 15.07 4.05 4.05 Total: -1.00 -30.40 268.80 -6.40 -36.80 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.48 Total: -1.90 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -1.46 Total: -15.49 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.08 Total: -36.23 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.08 Total: -4.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.40 -6.40 -36.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697472354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.748 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds