Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46986 * 2 1 4 4 N 1.46495 * 109.47254 * 120.00369 * 2 1 3 5 5 C 1.36941 * 120.00031 * 117.33261 * 4 2 1 6 6 H 1.07997 * 120.00103 * 151.10504 * 5 4 2 7 7 C 1.38816 * 119.99956 * 331.10938 * 5 4 2 8 8 N 1.31617 * 119.99818 * 341.78406 * 7 5 4 9 9 Si 1.86800 * 120.00067 * 161.78094 * 7 5 4 10 10 H 1.48502 * 109.46694 * 59.99980 * 9 7 5 11 11 H 1.48503 * 109.47216 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47085 * 299.99909 * 9 7 5 13 13 C 1.46497 * 120.00129 * 297.05904 * 4 2 1 14 14 C 1.52995 * 109.47292 * 89.99792 * 13 4 2 15 15 H 1.09003 * 115.54648 * 29.33094 * 14 13 4 16 16 C 1.53000 * 117.50019 * 243.62217 * 14 13 4 17 17 C 1.52999 * 60.00129 * 252.51140 * 16 14 13 18 18 F 1.39902 * 117.49897 * 252.51367 * 17 16 14 19 19 F 1.39894 * 117.52200 * 107.48163 * 17 16 14 20 20 H 1.08998 * 109.46954 * 299.99474 * 1 2 3 21 21 H 1.09002 * 109.47494 * 59.99828 * 1 2 3 22 22 H 1.09003 * 109.47306 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46799 * 240.00612 * 2 1 3 24 24 H 1.08996 * 109.46633 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47144 * 300.00386 * 3 2 1 26 26 H 1.08998 * 109.46845 * 60.00459 * 3 2 1 27 27 H 0.96998 * 119.99913 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.47063 * 210.00481 * 13 4 2 29 29 H 1.09007 * 109.46727 * 329.99939 * 13 4 2 30 30 H 1.08991 * 117.49906 * 0.02562 * 16 14 13 31 31 H 1.09001 * 117.49817 * 145.02111 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7600 -1.8351 1.0711 6 1 3.4901 -2.0904 1.8248 7 6 2.5734 -2.6669 -0.0245 8 7 1.4749 -2.5719 -0.7433 9 14 3.8812 -3.9210 -0.4785 10 1 4.0815 -4.8596 0.6547 11 1 3.4442 -4.6798 -1.6779 12 1 5.1573 -3.2209 -0.7729 13 6 1.7184 -0.1538 2.5257 14 6 0.4029 -0.7492 3.0313 15 1 0.1666 -1.7476 2.6632 16 6 -0.7639 0.2123 3.2657 17 6 -0.0276 -0.4020 4.4579 18 9 -0.6948 -1.3901 5.1898 19 9 0.8120 0.4352 5.2003 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.3443 -3.1534 -1.5086 28 1 2.5232 -0.4147 3.2129 29 1 1.6277 0.9309 2.4675 30 1 -0.5944 1.2690 3.0593 31 1 -1.7682 -0.1533 3.0516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700964517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = -54.857634 kcal Electronic energy + Delta-G solvation = -15684.003129 eV Core-core repulsion = 12830.904596 eV Total energy + Delta-G solvation = -2853.098533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.17521 -46.86438 -37.32034 -35.03381 -31.85498 -30.26926 -26.18615 -26.03513 -23.13578 -22.13916 -20.54595 -19.11610 -17.33303 -16.62857 -16.00988 -15.39875 -14.73773 -14.23777 -13.67484 -13.57360 -13.18279 -13.08973 -13.03489 -12.46217 -12.24581 -11.75303 -11.49354 -11.33025 -11.06505 -10.86130 -10.79701 -10.24616 -10.06938 -9.84570 -9.70863 -9.43289 -9.24498 -8.46343 -6.74821 -5.84599 -3.29057 3.36851 3.42660 3.44290 3.51121 3.74770 4.46847 4.82040 4.94329 5.13046 5.33531 5.55077 5.77168 6.04516 6.15983 6.21279 6.29957 6.44527 6.48044 6.54848 6.69602 6.74585 6.83601 6.93593 7.09243 7.64939 7.70590 7.84408 8.43766 9.18845 9.80062 10.33027 11.21962 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.029192 B = 0.010045 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.922319 B = 2786.798942 C = 3207.898503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.179 3.821 3 C -0.165 4.165 4 N -0.577 5.577 5 C -0.261 4.261 6 H 0.066 0.934 7 C 0.008 3.992 8 N -0.893 5.893 9 Si 0.901 3.099 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.171 3.829 14 C -0.133 4.133 15 H 0.131 0.869 16 C -0.178 4.178 17 C 0.167 3.833 18 F -0.173 7.173 19 F -0.169 7.169 20 H 0.030 0.970 21 H 0.025 0.975 22 H 0.071 0.929 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.254 0.746 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.112 0.888 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 5.695 4.281 7.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.073 3.927 3 C -0.224 4.224 4 N -0.296 5.296 5 C -0.390 4.390 6 H 0.084 0.916 7 C -0.191 4.191 8 N -0.537 5.537 9 Si 0.731 3.269 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.043 3.957 14 C -0.155 4.155 15 H 0.149 0.851 16 C -0.216 4.216 17 C 0.130 3.870 18 F -0.154 7.154 19 F -0.150 7.150 20 H 0.049 0.951 21 H 0.044 0.956 22 H 0.090 0.910 23 H 0.116 0.884 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.026 5.584 4.147 7.586 hybrid contribution 0.369 -0.763 0.038 0.849 sum -2.657 4.821 4.186 6.916 Atomic orbital electron populations 1.22200 0.98630 1.02092 0.97649 1.20323 0.91772 0.88665 0.91957 1.22377 1.00741 0.99965 0.99340 1.44037 1.60303 1.26766 0.98512 1.19171 1.12866 0.98743 1.08249 0.91612 1.25034 0.96440 0.97405 1.00225 1.70012 1.23510 1.40132 1.20010 0.86400 0.81710 0.81091 0.77742 1.20871 1.21679 1.21000 1.20528 0.90908 0.95641 0.88581 1.25162 0.99118 1.02283 0.88947 0.85125 1.24344 0.99585 1.01343 0.96304 1.20575 0.95640 0.88115 0.82650 1.92963 1.80551 1.61758 1.80134 1.92949 1.71674 1.70939 1.79408 0.95145 0.95567 0.91021 0.88355 0.93518 0.94119 0.94346 0.93556 0.92598 0.93161 0.86958 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.54 37.16 0.32 -2.70 16 2 C 0.18 3.98 2.39 -67.93 -0.16 3.81 16 3 C -0.17 -3.11 9.12 37.16 0.34 -2.77 16 4 N -0.58 -13.48 2.42 -165.66 -0.40 -13.88 16 5 C -0.26 -6.80 9.57 -15.06 -0.14 -6.95 16 6 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 7 C 0.01 0.22 4.86 -17.43 -0.08 0.14 16 8 N -0.89 -24.20 10.29 55.49 0.57 -23.63 16 9 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.17 3.44 5.09 -4.05 -0.02 3.42 16 14 C -0.13 -2.48 4.91 -90.62 -0.45 -2.93 16 15 H 0.13 2.78 8.14 -51.93 -0.42 2.36 16 16 C -0.18 -2.73 8.46 -26.73 -0.23 -2.96 16 17 C 0.17 2.89 5.20 -26.73 -0.14 2.75 16 18 F -0.17 -3.12 17.60 2.25 0.04 -3.08 16 19 F -0.17 -2.96 17.14 2.25 0.04 -2.92 16 20 H 0.03 0.55 5.47 -51.93 -0.28 0.27 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 1.68 7.33 -51.93 -0.38 1.30 16 23 H 0.10 2.52 5.85 -51.92 -0.30 2.22 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.67 6.57 -51.93 -0.34 0.33 16 27 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.06 1.14 8.04 -51.93 -0.42 0.73 16 29 H 0.05 0.93 6.01 -51.92 -0.31 0.62 16 30 H 0.11 1.56 8.01 -51.93 -0.42 1.15 16 31 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 260.69 15.07 3.93 3.93 Total: -1.00 -26.48 260.69 -5.54 -32.02 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.12 Total: -0.28 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.57 Total: -8.19 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.17 Total: -37.51 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.08 Total: -6.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.48 -5.54 -32.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700964517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.838 kcal (2) G-P(sol) polarization free energy of solvation -26.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds