Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46754 * 270.00132 * 3 2 1 5 5 H 1.48495 * 109.46949 * 29.99887 * 3 2 1 6 6 H 1.48495 * 109.47225 * 150.00346 * 3 2 1 7 7 C 1.38814 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99872 * 157.93626 * 7 2 1 9 9 N 1.36935 * 120.00273 * 337.93463 * 7 2 1 10 10 C 1.46504 * 119.99937 * 324.92932 * 9 7 2 11 11 C 1.52993 * 109.47058 * 270.00095 * 10 9 7 12 12 C 1.53001 * 109.47105 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47042 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.46805 * 65.00080 * 13 12 11 15 15 F 1.39896 * 109.46943 * 184.99789 * 13 12 11 16 16 C 1.46494 * 120.00432 * 144.92717 * 9 7 2 17 17 C 1.53008 * 117.49603 * 3.23731 * 16 9 7 18 18 C 1.53005 * 117.50060 * 294.58235 * 16 9 7 19 19 H 0.96995 * 119.99672 * 356.06739 * 1 2 3 20 20 H 1.09004 * 109.46899 * 29.99431 * 10 9 7 21 21 H 1.08991 * 109.47322 * 149.99588 * 10 9 7 22 22 H 1.09002 * 109.47423 * 299.99679 * 11 10 9 23 23 H 1.09002 * 109.47930 * 59.99783 * 11 10 9 24 24 H 1.08999 * 109.47331 * 299.99413 * 12 11 10 25 25 H 1.08998 * 109.47503 * 59.99842 * 12 11 10 26 26 H 1.08992 * 109.46892 * 304.99877 * 13 12 11 27 27 H 1.08998 * 115.55292 * 148.90958 * 16 9 7 28 28 H 1.09004 * 117.49709 * 0.02562 * 17 16 9 29 29 H 1.09001 * 117.49616 * 145.02232 * 17 16 9 30 30 H 1.08992 * 117.50031 * 214.97936 * 18 16 9 31 31 H 1.09007 * 117.49694 * 359.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4008 -2.3449 0.4444 10 6 0.4456 -2.2814 1.5535 11 6 1.1887 -2.4675 2.8778 12 6 0.1912 -2.4006 4.0360 13 6 0.9343 -2.5873 5.3604 14 9 1.8071 -1.5125 5.5610 15 9 0.0107 -2.6402 6.4099 16 6 1.7039 -3.6308 -0.1884 17 6 2.7654 -3.6431 -1.2903 18 6 1.2873 -3.8150 -1.6491 19 1 -0.4849 0.8381 0.0576 20 1 -0.0520 -1.3115 1.5493 21 1 -0.2968 -3.0711 1.4392 22 1 1.6864 -3.4373 2.8821 23 1 1.9312 -1.6777 2.9921 24 1 -0.3060 -1.4306 4.0318 25 1 -0.5515 -3.1901 3.9221 26 1 1.5031 -3.5165 5.3299 27 1 1.6464 -4.5015 0.4648 28 1 3.2386 -2.6945 -1.5439 29 1 3.4061 -4.5221 -1.3621 30 1 0.9562 -4.8067 -1.9568 31 1 0.7874 -2.9794 -2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701520737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = -72.989818 kcal Electronic energy + Delta-G solvation = -15126.838861 eV Core-core repulsion = 12272.954057 eV Total energy + Delta-G solvation = -2853.884804 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.67891 -46.68965 -37.14591 -34.62294 -32.78528 -30.37386 -27.14876 -24.44399 -22.45998 -21.41168 -20.79221 -19.66316 -17.30631 -16.87188 -16.45179 -15.74052 -15.30579 -14.62312 -14.19384 -13.69876 -13.47702 -13.09005 -12.78084 -12.57992 -12.12051 -11.88221 -11.38132 -11.01151 -10.84831 -10.79681 -10.67871 -10.52903 -10.17700 -9.93216 -9.65167 -9.55104 -9.26777 -8.47369 -6.58595 -5.80496 -3.40607 3.34290 3.42693 3.46267 4.10367 4.42666 4.53473 4.86491 4.91978 4.94538 5.27506 5.34829 5.67477 5.88844 5.91031 6.03515 6.10559 6.25948 6.37134 6.47996 6.54906 6.67339 6.69337 7.03114 7.13904 7.21638 7.65683 7.78854 8.45841 9.13693 9.77036 10.32251 11.15450 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.009626 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.887074 B = 2908.000068 C = 3739.792447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.010 3.990 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.553 5.553 10 C 0.147 3.853 11 C -0.135 4.135 12 C -0.165 4.165 13 C 0.259 3.741 14 F -0.207 7.207 15 F -0.216 7.216 16 C 0.121 3.879 17 C -0.197 4.197 18 C -0.223 4.223 19 H 0.255 0.745 20 H 0.102 0.898 21 H 0.026 0.974 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -6.339 6.415 9.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.269 5.269 10 C 0.021 3.979 11 C -0.175 4.175 12 C -0.204 4.204 13 C 0.205 3.795 14 F -0.189 7.189 15 F -0.198 7.198 16 C 0.011 3.989 17 C -0.235 4.235 18 C -0.264 4.264 19 H 0.065 0.935 20 H 0.119 0.881 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.982 -6.144 6.409 8.932 hybrid contribution 0.416 0.919 0.019 1.009 sum 1.397 -5.224 6.429 8.401 Atomic orbital electron populations 1.70037 1.05528 1.26048 1.51084 1.25117 0.94987 0.98752 1.00123 0.86433 0.79673 0.83691 0.77827 1.21262 1.21387 1.20218 1.19058 0.94396 0.85514 1.39702 0.91669 1.43424 1.49114 1.01407 1.32978 1.20938 0.90447 1.03154 0.83351 1.22180 0.98356 1.01413 0.95583 1.22647 1.00242 1.05004 0.92504 1.22111 0.82799 0.88926 0.85622 1.92972 1.70487 1.59622 1.95769 1.92944 1.68407 1.97058 1.61383 1.21220 1.00363 0.90235 0.87034 1.23035 0.91914 1.01829 1.06736 1.23370 0.97381 1.00601 1.05039 0.93535 0.88085 0.95545 0.93307 0.91255 0.89651 0.89493 0.87774 0.89637 0.88502 0.90795 0.91263 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 11.33 55.49 0.63 -24.23 16 2 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 3 Si 0.89 21.36 29.61 -169.99 -5.03 16.33 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.83 8.63 -15.06 -0.13 -6.96 16 8 H 0.07 1.74 6.55 -52.48 -0.34 1.39 16 9 N -0.55 -13.36 2.78 -165.66 -0.46 -13.82 16 10 C 0.15 3.26 5.34 -4.04 -0.02 3.24 16 11 C -0.14 -2.48 5.45 -26.73 -0.15 -2.62 16 12 C -0.17 -2.51 5.44 -26.73 -0.15 -2.65 16 13 C 0.26 3.61 5.29 37.16 0.20 3.80 16 14 F -0.21 -3.42 17.01 2.25 0.04 -3.38 16 15 F -0.22 -3.17 17.34 2.25 0.04 -3.13 16 16 C 0.12 2.54 6.56 -67.93 -0.45 2.10 16 17 C -0.20 -3.87 9.80 -26.69 -0.26 -4.13 16 18 C -0.22 -4.53 10.36 -26.69 -0.28 -4.81 16 19 H 0.25 6.93 8.32 -40.82 -0.34 6.59 16 20 H 0.10 2.56 5.36 -51.93 -0.28 2.29 16 21 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 1.43 7.93 -51.93 -0.41 1.01 16 24 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.10 2.08 6.37 -51.93 -0.33 1.75 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 268.95 15.07 4.05 4.05 Total: -1.00 -28.27 268.95 -6.35 -34.62 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.30 Total: 1.38 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.32 Total: -11.83 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.17 Total: -38.05 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.08 Total: -6.51 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.27 -6.35 -34.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701520737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.373 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds