Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46754 * 270.00132 * 3 2 1 5 5 H 1.48495 * 109.46949 * 29.99887 * 3 2 1 6 6 H 1.48495 * 109.47225 * 150.00346 * 3 2 1 7 7 C 1.38814 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99872 * 157.93626 * 7 2 1 9 9 N 1.36935 * 120.00273 * 337.93463 * 7 2 1 10 10 C 1.46504 * 119.99937 * 324.92932 * 9 7 2 11 11 C 1.52993 * 109.47058 * 270.00095 * 10 9 7 12 12 C 1.53001 * 109.47105 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47042 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.46805 * 65.00080 * 13 12 11 15 15 F 1.39896 * 109.46943 * 184.99789 * 13 12 11 16 16 C 1.46494 * 120.00432 * 144.92717 * 9 7 2 17 17 C 1.53008 * 117.49603 * 3.23731 * 16 9 7 18 18 C 1.53005 * 117.50060 * 294.58235 * 16 9 7 19 19 H 0.96995 * 119.99672 * 356.06739 * 1 2 3 20 20 H 1.09004 * 109.46899 * 29.99431 * 10 9 7 21 21 H 1.08991 * 109.47322 * 149.99588 * 10 9 7 22 22 H 1.09002 * 109.47423 * 299.99679 * 11 10 9 23 23 H 1.09002 * 109.47930 * 59.99783 * 11 10 9 24 24 H 1.08999 * 109.47331 * 299.99413 * 12 11 10 25 25 H 1.08998 * 109.47503 * 59.99842 * 12 11 10 26 26 H 1.08992 * 109.46892 * 304.99877 * 13 12 11 27 27 H 1.08998 * 115.55292 * 148.90958 * 16 9 7 28 28 H 1.09004 * 117.49709 * 0.02562 * 17 16 9 29 29 H 1.09001 * 117.49616 * 145.02232 * 17 16 9 30 30 H 1.08992 * 117.50031 * 214.97936 * 18 16 9 31 31 H 1.09007 * 117.49694 * 359.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4008 -2.3449 0.4444 10 6 0.4456 -2.2814 1.5535 11 6 1.1887 -2.4675 2.8778 12 6 0.1912 -2.4006 4.0360 13 6 0.9343 -2.5873 5.3604 14 9 1.8071 -1.5125 5.5610 15 9 0.0107 -2.6402 6.4099 16 6 1.7039 -3.6308 -0.1884 17 6 2.7654 -3.6431 -1.2903 18 6 1.2873 -3.8150 -1.6491 19 1 -0.4849 0.8381 0.0576 20 1 -0.0520 -1.3115 1.5493 21 1 -0.2968 -3.0711 1.4392 22 1 1.6864 -3.4373 2.8821 23 1 1.9312 -1.6777 2.9921 24 1 -0.3060 -1.4306 4.0318 25 1 -0.5515 -3.1901 3.9221 26 1 1.5031 -3.5165 5.3299 27 1 1.6464 -4.5015 0.4648 28 1 3.2386 -2.6945 -1.5439 29 1 3.4061 -4.5221 -1.3621 30 1 0.9562 -4.8067 -1.9568 31 1 0.7874 -2.9794 -2.1391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701520737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = -87.872433 kcal Electronic energy + Delta-G solvation = -15127.484220 eV Core-core repulsion = 12272.954057 eV Total energy + Delta-G solvation = -2854.530163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.83875 -47.86432 -38.86069 -36.16049 -34.54682 -32.17020 -28.74541 -26.25096 -23.90287 -22.98927 -22.24755 -21.44256 -18.45937 -18.33412 -17.95485 -17.31561 -16.90811 -16.33600 -15.88377 -15.17039 -14.78571 -14.52550 -14.27451 -14.03621 -13.68342 -13.52086 -13.07057 -12.69642 -12.59513 -12.36294 -12.29923 -12.09153 -11.87220 -11.59383 -11.34592 -11.24666 -10.87099 -10.46063 -8.52845 -7.79930 -5.44372 1.42026 1.46132 1.54535 2.48377 2.96410 3.15563 3.40114 3.42651 3.57343 3.77084 3.84943 4.32198 4.36878 4.48928 4.53653 4.63866 4.72708 4.84563 4.95308 5.02609 5.09921 5.20185 5.38140 5.52778 5.56642 5.69024 5.88630 6.45674 7.16107 7.87901 8.35497 9.10351 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.009626 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.887074 B = 2908.000068 C = 3739.792447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.038 4.038 3 Si 0.948 3.052 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.257 4.257 8 H 0.059 0.941 9 N -0.572 5.572 10 C 0.145 3.855 11 C -0.119 4.119 12 C -0.159 4.159 13 C 0.260 3.740 14 F -0.225 7.225 15 F -0.219 7.219 16 C 0.103 3.897 17 C -0.184 4.184 18 C -0.221 4.221 19 H 0.250 0.750 20 H 0.066 0.934 21 H 0.036 0.964 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.146 0.854 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -8.181 7.072 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.235 4.235 3 Si 0.776 3.224 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.388 4.388 8 H 0.077 0.923 9 N -0.289 5.289 10 C 0.019 3.981 11 C -0.159 4.159 12 C -0.198 4.198 13 C 0.207 3.793 14 F -0.206 7.206 15 F -0.201 7.201 16 C -0.005 4.005 17 C -0.222 4.222 18 C -0.262 4.262 19 H 0.059 0.941 20 H 0.084 0.916 21 H 0.054 0.946 22 H 0.091 0.909 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.129 0.871 26 H 0.163 0.837 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.777 -8.001 7.070 10.824 hybrid contribution 0.157 1.418 -0.227 1.444 sum 1.934 -6.583 6.843 9.690 Atomic orbital electron populations 1.70155 1.06595 1.26163 1.52906 1.25716 0.95596 1.01232 1.00930 0.85599 0.78650 0.80623 0.77546 1.21247 1.21736 1.19730 1.19221 0.94240 0.86773 1.38535 0.92294 1.43660 1.49252 1.01941 1.34036 1.20887 0.90752 1.01570 0.84868 1.21881 0.97890 1.01527 0.94556 1.22554 0.99964 1.04965 0.92319 1.22337 0.82617 0.89819 0.84501 1.92943 1.71026 1.60852 1.95804 1.92938 1.68692 1.97067 1.61382 1.21578 1.01370 0.89844 0.87733 1.23047 0.91792 1.02228 1.05176 1.23287 0.97874 1.00844 1.04208 0.94061 0.91622 0.94577 0.90932 0.94105 0.91601 0.87056 0.83674 0.86440 0.90997 0.86944 0.87899 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.83 11.33 21.65 0.25 -52.58 16 2 C -0.04 -2.07 4.96 84.86 0.42 -1.65 16 3 Si 0.95 44.75 29.61 68.60 2.03 46.79 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.26 -13.79 8.63 84.03 0.73 -13.06 16 8 H 0.06 3.18 6.55 -2.91 -0.02 3.16 16 9 N -0.57 -27.38 2.78 -678.03 -1.88 -29.26 16 10 C 0.14 6.37 5.34 86.38 0.46 6.83 16 11 C -0.12 -4.17 5.45 30.59 0.17 -4.00 16 12 C -0.16 -4.55 5.44 30.60 0.17 -4.38 16 13 C 0.26 6.58 5.29 71.98 0.38 6.96 16 14 F -0.22 -7.11 17.01 44.97 0.77 -6.35 16 15 F -0.22 -5.91 17.34 44.97 0.78 -5.13 16 16 C 0.10 4.11 6.56 45.00 0.30 4.41 16 17 C -0.18 -6.83 9.80 30.62 0.30 -6.53 16 18 C -0.22 -8.63 10.36 30.62 0.32 -8.31 16 19 H 0.25 14.06 8.32 -92.71 -0.77 13.28 16 20 H 0.07 3.42 5.36 -2.38 -0.01 3.40 16 21 H 0.04 1.47 8.07 -2.39 -0.02 1.46 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.04 1.66 7.93 -2.39 -0.02 1.64 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.07 3.03 6.37 -2.38 -0.02 3.02 16 29 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.05 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -61.77 268.95 6.28 -55.49 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.11 Total: 10.78 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.23 Total: -19.73 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.64 Total: -81.84 kcal Atomic # 9 Polarization: -13.02 SS G_CDS: 1.54 Total: -11.47 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.79 kcal Total: -61.77 6.28 -55.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701520737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.384 kcal (2) G-P(sol) polarization free energy of solvation -61.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds