Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99728 * 2 1 4 4 H 1.48500 * 109.47036 * 239.99956 * 3 2 1 5 5 H 1.48496 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47005 * 120.00239 * 3 2 1 7 7 C 1.37879 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00113 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46650 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.46894 * 111.00559 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 12 11 15 15 H 1.08997 * 115.55341 * 29.41835 * 14 13 12 16 16 C 1.52999 * 117.49718 * 175.08951 * 14 13 12 17 17 C 1.53002 * 117.49654 * 243.74295 * 14 13 12 18 18 F 1.39906 * 117.49955 * 0.02562 * 17 14 13 19 19 F 1.39899 * 117.49794 * 145.02043 * 17 14 13 20 20 H 0.96998 * 120.00283 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.46925 * 59.99915 * 9 7 2 22 22 H 1.08995 * 109.46997 * 299.99758 * 9 7 2 23 23 H 1.09003 * 109.46989 * 60.00060 * 10 9 7 24 24 H 1.09005 * 109.47424 * 299.99837 * 10 9 7 25 25 H 1.00905 * 110.99607 * 303.95664 * 11 10 9 26 26 H 1.09002 * 109.47104 * 59.99767 * 12 11 10 27 27 H 1.08998 * 109.46828 * 300.00600 * 12 11 10 28 28 H 1.09002 * 109.47153 * 59.99762 * 13 12 11 29 29 H 1.09001 * 109.46832 * 299.99953 * 13 12 11 30 30 H 1.08998 * 117.50075 * 214.97635 * 16 14 13 31 31 H 1.09004 * 117.49836 * 359.96930 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5110 -4.9343 0.0012 12 6 2.4354 -6.0758 0.0018 13 6 1.6354 -7.3800 0.0018 14 6 2.5983 -8.5690 0.0031 15 1 3.5595 -8.3950 0.4867 16 6 1.9920 -9.9689 0.1194 17 6 2.5773 -9.4964 -1.2137 18 9 1.6794 -9.1920 -2.2425 19 9 3.7931 -10.0565 -1.6200 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6042 0.8906 24 1 2.8721 -3.6043 -0.8895 25 1 0.8748 -4.9841 0.7828 26 1 3.0633 -6.0344 0.8918 27 1 3.0634 -6.0352 -0.8881 28 1 1.0077 -7.4212 -0.8884 29 1 1.0071 -7.4208 0.8915 30 1 2.5545 -10.7160 0.6793 31 1 0.9072 -10.0428 0.1956 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701955514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = -108.599343 kcal Electronic energy + Delta-G solvation = -14183.536211 eV Core-core repulsion = 11328.107262 eV Total energy + Delta-G solvation = -2855.428949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.63453 -48.33784 -38.51366 -37.04624 -35.06056 -32.43957 -29.65224 -26.14724 -23.52929 -23.43887 -22.58012 -21.58928 -18.73912 -18.51157 -17.76054 -17.03726 -16.70327 -16.46098 -15.53204 -15.24457 -15.04270 -14.83671 -14.58610 -14.47174 -14.34501 -13.89965 -13.25029 -13.02601 -12.74410 -12.65268 -12.40014 -12.37199 -11.86699 -11.63682 -11.39198 -11.17308 -10.75196 -10.55887 -9.29138 -8.20264 -6.32129 1.40853 1.44218 1.52211 2.11586 2.19916 2.40885 3.06395 3.13122 3.43456 3.63998 3.67594 4.10539 4.19066 4.39588 4.57264 4.59759 4.63430 4.71160 4.78407 4.89810 5.05012 5.09760 5.25406 5.44293 5.66820 5.78188 6.13178 6.26988 6.56679 6.85027 7.37284 8.91778 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.069931 B = 0.004016 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.297543 B = 6970.564978 C = 7052.000680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.083 3.917 11 N -0.702 5.702 12 C 0.061 3.939 13 C -0.088 4.088 14 C -0.139 4.139 15 H 0.143 0.857 16 C -0.141 4.141 17 C 0.155 3.845 18 F -0.176 7.176 19 F -0.176 7.176 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.006 1.006 23 H 0.022 0.978 24 H 0.054 0.946 25 H 0.342 0.658 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -19.675 2.588 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.334 5.334 12 C -0.068 4.068 13 C -0.125 4.125 14 C -0.158 4.158 15 H 0.161 0.839 16 C -0.178 4.178 17 C 0.118 3.882 18 F -0.157 7.157 19 F -0.157 7.157 20 H 0.073 0.927 21 H 0.011 0.989 22 H 0.013 0.987 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.165 0.835 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.930 -19.583 1.848 20.279 hybrid contribution 0.552 1.010 0.330 1.197 sum 5.482 -18.573 2.178 19.488 Atomic orbital electron populations 1.70100 1.07849 1.27923 1.51306 1.25983 0.95771 1.03398 0.94534 0.85465 0.78243 0.77909 0.79205 1.19261 1.20740 1.19004 1.21600 0.93559 0.92304 1.51158 0.92140 1.18936 0.94356 0.92326 0.95127 1.21773 0.95606 0.88438 0.98739 1.60449 1.20643 1.01913 1.50365 1.21962 0.94514 0.89819 1.00539 1.21107 0.96913 0.90460 1.04045 1.23726 1.03598 0.92969 0.95538 0.83907 1.24553 1.04687 0.97144 0.91404 1.20682 0.78824 1.07030 0.81634 1.92979 1.66708 1.93650 1.62367 1.92983 1.44237 1.86073 1.92360 0.92691 0.98901 0.98732 0.95940 0.92764 0.83988 0.94105 0.92251 0.91320 0.88646 0.83531 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.65 9.11 25.60 0.23 -31.41 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.62 5.23 29.85 0.16 1.78 16 10 C 0.08 3.55 5.62 86.30 0.49 4.03 16 11 N -0.70 -24.66 6.50 -513.90 -3.34 -28.00 16 12 C 0.06 1.62 5.64 86.30 0.49 2.10 16 13 C -0.09 -1.80 5.74 30.59 0.18 -1.62 16 14 C -0.14 -2.25 5.72 -10.79 -0.06 -2.31 16 15 H 0.14 1.94 8.08 -2.39 -0.02 1.92 16 16 C -0.14 -1.64 10.22 30.62 0.31 -1.33 16 17 C 0.15 3.11 5.20 30.62 0.16 3.27 16 18 F -0.18 -4.49 16.48 44.97 0.74 -3.75 16 19 F -0.18 -4.00 17.60 44.97 0.79 -3.21 16 20 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 21 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 22 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 23 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.34 11.26 8.73 -89.69 -0.78 10.48 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.66 7.06 -2.39 -0.02 1.65 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -67.01 275.87 3.25 -63.77 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 0.33 Total: 6.75 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 2.41 Total: -24.96 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -3.06 Total: -85.05 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 1.53 Total: -6.97 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.01 3.25 -63.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701955514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.830 kcal (2) G-P(sol) polarization free energy of solvation -67.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds