Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39904 * 109.46773 * 2 1 4 4 F 1.39898 * 109.47554 * 240.00201 * 2 1 3 5 5 C 1.52999 * 109.47313 * 119.99339 * 2 1 3 6 6 N 1.46904 * 109.47091 * 180.02562 * 5 2 1 7 7 C 1.46899 * 110.99675 * 190.00101 * 6 5 2 8 8 C 1.50707 * 109.46907 * 162.98101 * 7 6 5 9 9 H 1.07999 * 119.99710 * 4.70768 * 8 7 6 10 10 C 1.37877 * 120.00138 * 184.70395 * 8 7 6 11 11 N 1.31510 * 119.99720 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99913 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47119 * 89.99784 * 12 10 8 14 14 H 1.48497 * 109.46837 * 209.99979 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99812 * 12 10 8 16 16 C 1.46900 * 110.99651 * 66.05197 * 6 5 2 17 17 C 1.53004 * 117.49838 * 127.02220 * 16 6 5 18 18 C 1.53003 * 117.50202 * 58.35829 * 16 6 5 19 19 H 1.08994 * 109.47501 * 299.99815 * 1 2 3 20 20 H 1.08991 * 109.47449 * 60.00395 * 1 2 3 21 21 H 1.09004 * 109.46388 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47527 * 300.00830 * 5 2 1 23 23 H 1.09004 * 109.47113 * 60.00787 * 5 2 1 24 24 H 1.08994 * 109.47627 * 282.97906 * 7 6 5 25 25 H 1.09001 * 109.47184 * 42.98463 * 7 6 5 26 26 H 0.97002 * 119.99969 * 180.02562 * 11 10 8 27 27 H 1.09000 * 115.55162 * 272.68424 * 16 6 5 28 28 H 1.08998 * 117.49831 * 359.97438 * 17 16 6 29 29 H 1.08994 * 117.50194 * 145.02319 * 17 16 6 30 30 H 1.08999 * 117.49874 * 214.97549 * 18 16 6 31 31 H 1.09005 * 117.49673 * 359.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0400 -0.7211 1.2493 6 7 3.5091 -0.7205 1.2496 7 6 4.0356 -1.6019 2.3002 8 6 5.4842 -1.9084 2.0194 9 1 5.9865 -1.4306 1.1913 10 6 6.1682 -2.7988 2.8197 11 7 7.4324 -3.0658 2.5750 12 14 5.2991 -3.6256 4.2517 13 1 4.6839 -4.8960 3.7904 14 1 6.2815 -3.9132 5.3275 15 1 4.2410 -2.7248 4.7754 16 6 4.0349 0.6435 1.3943 17 6 5.0506 0.8943 2.5107 18 6 3.6228 1.4311 2.6396 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5137 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.6766 -0.2073 2.1392 23 1 1.6768 -1.7488 1.2494 24 1 3.9500 -1.1062 3.2671 25 1 3.4643 -2.5301 2.3159 26 1 7.9135 -3.6924 3.1378 27 1 4.1603 1.2000 0.4655 28 1 5.3284 0.0473 3.1380 29 1 5.8439 1.6161 2.3166 30 1 3.4775 2.5058 2.5302 31 1 2.9612 0.9373 3.3514 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704736701.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -63.123205 kcal Electronic energy + Delta-G solvation = -15775.214613 eV Core-core repulsion = 12921.757657 eV Total energy + Delta-G solvation = -2853.456955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.50042 -46.49559 -38.34930 -33.56880 -32.74521 -31.23246 -28.26705 -25.08500 -22.59422 -21.77179 -21.08233 -19.03773 -17.33427 -16.85607 -16.25026 -15.94237 -15.55263 -14.45779 -13.99313 -13.77601 -13.37862 -12.90804 -12.79693 -12.63125 -12.42764 -12.42028 -11.92041 -11.85376 -11.37179 -11.08324 -10.78162 -10.40840 -10.36739 -9.91319 -9.86063 -9.34580 -9.21642 -8.58681 -7.46807 -6.05945 -4.01827 3.24961 3.32691 3.33335 4.02149 4.34242 4.39236 4.45140 4.64426 4.67694 4.99642 5.24861 5.36946 5.47094 5.62372 5.65219 5.73037 5.77204 5.85433 6.01136 6.16012 6.51317 6.61911 6.74550 6.79916 7.19107 7.52405 7.76950 7.91843 8.62549 9.07686 9.54213 11.07103 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.036692 B = 0.009435 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.915812 B = 2967.082398 C = 3191.787208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.295 3.705 3 F -0.200 7.200 4 F -0.194 7.194 5 C 0.012 3.988 6 N -0.492 5.492 7 C 0.158 3.842 8 C -0.498 4.498 9 H 0.084 0.916 10 C 0.068 3.932 11 N -0.897 5.897 12 Si 0.870 3.130 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.269 1.269 16 C 0.036 3.964 17 C -0.167 4.167 18 C -0.229 4.229 19 H 0.084 0.916 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.055 0.945 23 H 0.096 0.904 24 H -0.003 1.003 25 H 0.023 0.977 26 H 0.264 0.736 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 6.483 -1.081 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.258 3.742 3 F -0.181 7.181 4 F -0.175 7.175 5 C -0.118 4.118 6 N -0.214 5.214 7 C 0.032 3.968 8 C -0.537 4.537 9 H 0.102 0.898 10 C -0.133 4.133 11 N -0.536 5.536 12 Si 0.698 3.302 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.194 1.194 16 C -0.073 4.073 17 C -0.204 4.204 18 C -0.268 4.268 19 H 0.103 0.897 20 H 0.097 0.903 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.014 0.986 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.132 0.868 28 H 0.147 0.853 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.895 6.177 -1.501 14.377 hybrid contribution -0.562 -0.165 1.465 1.578 sum -13.458 6.011 -0.036 14.739 Atomic orbital electron populations 1.22742 0.92440 1.05112 1.04804 1.21096 0.92361 0.75821 0.84943 1.92977 1.90460 1.37792 1.96902 1.93013 1.90601 1.80867 1.52979 1.23115 0.92558 1.01444 0.94660 1.62051 1.02430 1.07324 1.49618 1.20328 0.97357 0.90894 0.88191 1.20951 0.92613 1.24956 1.15142 0.89817 1.24878 0.94805 0.96311 0.97341 1.69883 1.08958 1.35378 1.39348 0.86945 0.79794 0.80494 0.83011 1.20148 1.21134 1.19429 1.22674 1.02861 0.89318 0.92465 1.23527 0.90919 1.03387 1.02550 1.23342 1.00381 0.99543 1.03520 0.89666 0.90289 0.89436 0.92668 0.88582 0.98585 0.95876 0.92640 0.86819 0.85287 0.89656 0.89710 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 9.38 37.16 0.35 -1.67 16 2 C 0.29 4.50 2.20 -26.73 -0.06 4.44 16 3 F -0.20 -3.30 14.28 2.25 0.03 -3.27 16 4 F -0.19 -3.47 16.98 2.25 0.04 -3.43 16 5 C 0.01 0.20 4.52 -3.82 -0.02 0.18 16 6 N -0.49 -10.48 4.60 -228.08 -1.05 -11.53 16 7 C 0.16 3.75 3.34 -4.97 -0.02 3.73 16 8 C -0.50 -13.90 7.42 -34.44 -0.26 -14.15 16 9 H 0.08 2.61 8.04 -52.49 -0.42 2.18 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 12 Si 0.87 21.02 27.38 -169.99 -4.65 16.37 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.27 -6.22 6.68 56.52 0.38 -5.85 16 16 C 0.04 0.72 4.35 -67.71 -0.29 0.43 16 17 C -0.17 -3.36 8.87 -26.69 -0.24 -3.60 16 18 C -0.23 -3.99 9.25 -26.69 -0.25 -4.23 16 19 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.85 6.83 -51.93 -0.35 0.49 16 23 H 0.10 1.50 7.85 -51.93 -0.41 1.09 16 24 H 0.00 -0.08 5.42 -51.93 -0.28 -0.36 16 25 H 0.02 0.55 6.96 -51.93 -0.36 0.19 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.11 2.27 7.21 -51.93 -0.37 1.90 16 28 H 0.13 2.99 4.92 -51.93 -0.26 2.73 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.40 7.14 -51.93 -0.37 1.03 16 LS Contribution 256.26 15.07 3.86 3.86 Total: -1.00 -30.46 256.26 -5.97 -36.43 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.10 Total: 0.99 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -0.87 Total: -13.03 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.28 Total: -37.92 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.07 Total: -6.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.65 Total: 16.37 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.46 -5.97 -36.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704736701.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.689 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds