Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39904 * 109.46773 * 2 1 4 4 F 1.39898 * 109.47554 * 240.00201 * 2 1 3 5 5 C 1.52999 * 109.47313 * 119.99339 * 2 1 3 6 6 N 1.46904 * 109.47091 * 180.02562 * 5 2 1 7 7 C 1.46899 * 110.99675 * 190.00101 * 6 5 2 8 8 C 1.50707 * 109.46907 * 162.98101 * 7 6 5 9 9 H 1.07999 * 119.99710 * 4.70768 * 8 7 6 10 10 C 1.37877 * 120.00138 * 184.70395 * 8 7 6 11 11 N 1.31510 * 119.99720 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99913 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47119 * 89.99784 * 12 10 8 14 14 H 1.48497 * 109.46837 * 209.99979 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99812 * 12 10 8 16 16 C 1.46900 * 110.99651 * 66.05197 * 6 5 2 17 17 C 1.53004 * 117.49838 * 127.02220 * 16 6 5 18 18 C 1.53003 * 117.50202 * 58.35829 * 16 6 5 19 19 H 1.08994 * 109.47501 * 299.99815 * 1 2 3 20 20 H 1.08991 * 109.47449 * 60.00395 * 1 2 3 21 21 H 1.09004 * 109.46388 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47527 * 300.00830 * 5 2 1 23 23 H 1.09004 * 109.47113 * 60.00787 * 5 2 1 24 24 H 1.08994 * 109.47627 * 282.97906 * 7 6 5 25 25 H 1.09001 * 109.47184 * 42.98463 * 7 6 5 26 26 H 0.97002 * 119.99969 * 180.02562 * 11 10 8 27 27 H 1.09000 * 115.55162 * 272.68424 * 16 6 5 28 28 H 1.08998 * 117.49831 * 359.97438 * 17 16 6 29 29 H 1.08994 * 117.50194 * 145.02319 * 17 16 6 30 30 H 1.08999 * 117.49874 * 214.97549 * 18 16 6 31 31 H 1.09005 * 117.49673 * 359.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0400 -0.7211 1.2493 6 7 3.5091 -0.7205 1.2496 7 6 4.0356 -1.6019 2.3002 8 6 5.4842 -1.9084 2.0194 9 1 5.9865 -1.4306 1.1913 10 6 6.1682 -2.7988 2.8197 11 7 7.4324 -3.0658 2.5750 12 14 5.2991 -3.6256 4.2517 13 1 4.6839 -4.8960 3.7904 14 1 6.2815 -3.9132 5.3275 15 1 4.2410 -2.7248 4.7754 16 6 4.0349 0.6435 1.3943 17 6 5.0506 0.8943 2.5107 18 6 3.6228 1.4311 2.6396 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5137 -0.8899 21 1 -0.3632 -1.0277 0.0005 22 1 1.6766 -0.2073 2.1392 23 1 1.6768 -1.7488 1.2494 24 1 3.9500 -1.1062 3.2671 25 1 3.4643 -2.5301 2.3159 26 1 7.9135 -3.6924 3.1378 27 1 4.1603 1.2000 0.4655 28 1 5.3284 0.0473 3.1380 29 1 5.8439 1.6161 2.3166 30 1 3.4775 2.5058 2.5302 31 1 2.9612 0.9373 3.3514 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704736701.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -83.658727 kcal Electronic energy + Delta-G solvation = -15776.105100 eV Core-core repulsion = 12921.757657 eV Total energy + Delta-G solvation = -2854.347443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.73974 -47.76211 -39.93992 -35.07049 -34.69436 -32.61094 -30.00195 -26.50127 -24.38559 -23.25299 -22.42966 -20.67833 -18.91766 -18.59776 -17.62803 -17.34356 -16.91115 -16.30715 -15.66361 -15.31016 -14.70358 -14.50021 -14.16083 -13.94327 -13.73895 -13.58969 -13.31043 -13.07535 -12.90805 -12.76594 -12.56885 -12.02705 -11.96909 -11.67730 -11.46793 -11.36732 -10.78319 -10.72298 -9.06360 -8.24648 -6.25904 1.35348 1.36502 1.46452 2.35280 2.82821 2.96363 3.07241 3.13283 3.37803 3.58162 3.85808 4.08615 4.12164 4.19334 4.40298 4.51100 4.69237 4.71340 4.77019 4.92903 4.95177 5.03889 5.06579 5.22599 5.50128 5.54588 5.92157 6.28218 6.58606 6.79393 7.34080 8.92379 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.036692 B = 0.009435 C = 0.008770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.915812 B = 2967.082398 C = 3191.787208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.285 3.715 3 F -0.210 7.210 4 F -0.215 7.215 5 C 0.007 3.993 6 N -0.519 5.519 7 C 0.170 3.830 8 C -0.497 4.497 9 H 0.032 0.968 10 C 0.006 3.994 11 N -0.949 5.949 12 Si 0.944 3.056 13 H -0.266 1.266 14 H -0.285 1.285 15 H -0.247 1.247 16 C 0.023 3.977 17 C -0.190 4.190 18 C -0.188 4.188 19 H 0.106 0.894 20 H 0.089 0.911 21 H 0.103 0.897 22 H 0.077 0.923 23 H 0.107 0.893 24 H 0.003 0.997 25 H 0.031 0.969 26 H 0.265 0.735 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.248 6.879 0.181 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.249 3.751 3 F -0.191 7.191 4 F -0.196 7.196 5 C -0.122 4.122 6 N -0.242 5.242 7 C 0.044 3.956 8 C -0.536 4.536 9 H 0.050 0.950 10 C -0.190 4.190 11 N -0.590 5.590 12 Si 0.768 3.232 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.170 1.170 16 C -0.086 4.086 17 C -0.227 4.227 18 C -0.227 4.227 19 H 0.125 0.875 20 H 0.107 0.893 21 H 0.122 0.878 22 H 0.095 0.905 23 H 0.126 0.874 24 H 0.020 0.980 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.929 6.594 -0.253 17.242 hybrid contribution 0.432 -0.219 0.974 1.088 sum -15.497 6.375 0.721 16.772 Atomic orbital electron populations 1.22734 0.88028 1.06780 1.06424 1.21569 0.95205 0.74929 0.83418 1.92954 1.90929 1.38358 1.96845 1.92972 1.91206 1.81328 1.54118 1.23305 0.89482 1.02924 0.96440 1.61847 1.05591 1.07733 1.49011 1.20049 0.94604 0.91830 0.89134 1.21076 0.94942 1.24201 1.13353 0.94977 1.25809 0.95434 0.97167 1.00635 1.70057 1.11031 1.36722 1.41188 0.85765 0.78950 0.79679 0.78854 1.19138 1.21039 1.17043 1.22635 1.03545 0.89396 0.92994 1.23391 0.92977 1.03215 1.03094 1.23361 0.97519 1.00752 1.01077 0.87511 0.89254 0.87785 0.90495 0.87435 0.97964 0.95135 0.92571 0.87388 0.88503 0.89063 0.86999 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.38 71.98 0.68 -2.42 16 2 C 0.29 8.04 2.20 30.59 0.07 8.10 16 3 F -0.21 -6.48 14.28 44.97 0.64 -5.84 16 4 F -0.21 -7.49 16.98 44.97 0.76 -6.73 16 5 C 0.01 0.22 4.52 86.30 0.39 0.61 16 6 N -0.52 -21.70 4.60 -875.50 -4.03 -25.72 16 7 C 0.17 7.94 3.34 85.56 0.29 8.22 16 8 C -0.50 -28.53 7.42 25.60 0.19 -28.34 16 9 H 0.03 2.11 8.04 -2.91 -0.02 2.09 16 10 C 0.01 0.37 5.47 84.66 0.46 0.83 16 11 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 12 Si 0.94 43.14 27.38 68.60 1.88 45.01 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.25 -10.29 6.68 99.48 0.66 -9.63 16 16 C 0.02 0.91 4.35 44.92 0.20 1.11 16 17 C -0.19 -7.64 8.87 30.62 0.27 -7.36 16 18 C -0.19 -6.06 9.25 30.62 0.28 -5.77 16 19 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 20 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 22 H 0.08 2.05 6.83 -2.39 -0.02 2.03 16 23 H 0.11 3.04 7.85 -2.38 -0.02 3.02 16 24 H 0.00 0.13 5.42 -2.39 -0.01 0.11 16 25 H 0.03 1.38 6.96 -2.39 -0.02 1.36 16 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.11 4.32 7.21 -2.39 -0.02 4.31 16 28 H 0.10 4.57 4.92 -2.39 -0.01 4.56 16 29 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.09 2.77 7.14 -2.38 -0.02 2.76 16 Total: -1.00 -68.17 256.26 3.46 -64.72 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 1.08 Total: 12.76 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 2.82 Total: -25.02 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -3.73 Total: -84.90 kcal Atomic # 9 Polarization: -13.98 SS G_CDS: 1.41 Total: -12.57 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.01 kcal Total: -68.17 3.46 -64.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704736701.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.939 kcal (2) G-P(sol) polarization free energy of solvation -68.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds