Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47070 * 2 1 4 4 C 1.35173 * 117.00160 * 180.02562 * 3 2 1 5 5 N 1.32517 * 119.99852 * 0.02562 * 4 3 2 6 6 C 1.32775 * 119.99562 * 172.85634 * 5 4 3 7 7 H 1.07994 * 120.00578 * 346.55848 * 6 5 4 8 8 C 1.40529 * 119.99820 * 166.56097 * 6 5 4 9 9 N 1.30717 * 119.99891 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00089 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47286 * 90.00286 * 10 8 6 12 12 H 1.48503 * 109.46884 * 209.99713 * 10 8 6 13 13 H 1.48496 * 109.47506 * 329.99858 * 10 8 6 14 14 C 1.46979 * 120.00222 * 180.02562 * 4 3 2 15 15 C 1.40072 * 120.19124 * 139.12463 * 14 4 3 16 16 C 1.37802 * 119.80821 * 180.02562 * 15 14 4 17 17 C 1.38479 * 120.18995 * 359.97438 * 16 15 14 18 18 C 1.38469 * 120.38793 * 0.29480 * 17 16 15 19 19 C 1.37817 * 120.18495 * 359.44564 * 18 17 16 20 20 H 1.08991 * 109.47385 * 59.99359 * 1 2 3 21 21 H 1.09006 * 109.46906 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46727 * 299.99009 * 1 2 3 23 23 H 1.09000 * 109.46727 * 240.00991 * 2 1 3 24 24 H 1.08991 * 109.47385 * 120.00641 * 2 1 3 25 25 H 0.97000 * 120.00057 * 180.02562 * 9 8 6 26 26 H 1.08004 * 120.09228 * 0.04763 * 15 14 4 27 27 H 1.07997 * 119.90545 * 179.97438 * 16 15 14 28 28 H 1.08004 * 119.80842 * 180.02562 * 17 16 15 29 29 H 1.07998 * 119.90721 * 179.72590 * 18 17 16 30 30 H 1.08000 * 120.09781 * 180.25211 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3464 1.5244 -0.0005 5 7 4.1537 0.4735 -0.0015 6 6 5.4628 0.6422 -0.1451 7 1 5.8517 1.5941 -0.4751 8 6 6.3425 -0.4180 0.1324 9 7 5.8719 -1.5701 0.5324 10 14 8.1842 -0.1809 -0.0701 11 1 8.7641 0.3064 1.2072 12 1 8.8125 -1.4755 -0.4368 13 1 8.4403 0.8147 -1.1417 14 6 3.9082 2.8826 0.0000 15 6 5.0238 3.1831 0.7920 16 6 5.5437 4.4593 0.7868 17 6 4.9669 5.4431 0.0014 18 6 3.8605 5.1562 -0.7803 19 6 3.3309 3.8839 -0.7913 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8898 25 1 6.4791 -2.3018 0.7243 26 1 5.4753 2.4167 1.4045 27 1 6.4035 4.6928 1.3972 28 1 5.3796 6.4411 0.0017 29 1 3.4141 5.9306 -1.3866 30 1 2.4704 3.6607 -1.4046 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714559923.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -26.343816 kcal Electronic energy + Delta-G solvation = -14327.071812 eV Core-core repulsion = 11893.606166 eV Total energy + Delta-G solvation = -2433.465646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21145 -38.77733 -36.63297 -34.24904 -32.24312 -31.51113 -31.03789 -27.17776 -24.61016 -23.18645 -23.01269 -21.46640 -19.15148 -18.07093 -17.55299 -16.61110 -16.48324 -16.08272 -15.36836 -14.98347 -14.38855 -14.24140 -14.16464 -13.53083 -13.43350 -13.19916 -13.16202 -12.99633 -12.28650 -12.12696 -12.06304 -11.95201 -11.76265 -11.34376 -10.25136 -9.79835 -9.55007 -9.31881 -8.88778 -6.15132 0.42092 0.69073 1.26026 1.31586 1.48362 1.94552 2.10956 2.85732 3.08414 3.53952 4.20879 4.24264 4.27777 4.34642 4.40964 4.56497 4.70220 4.77868 4.85478 4.93735 4.99139 5.06712 5.14803 5.30942 5.36654 5.39061 5.74295 5.78798 5.91446 5.97031 6.33571 6.55079 7.43679 8.02172 8.52538 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.013362 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.033648 B = 2094.962152 C = 3549.368476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 O -0.336 6.336 4 C 0.005 3.995 5 N -0.408 5.408 6 C -0.291 4.291 7 H 0.066 0.934 8 C 0.026 3.974 9 N -0.799 5.799 10 Si 1.000 3.000 11 H -0.251 1.251 12 H -0.256 1.256 13 H -0.255 1.255 14 C -0.011 4.011 15 C -0.132 4.132 16 C -0.121 4.121 17 C -0.142 4.142 18 C -0.116 4.116 19 C -0.143 4.143 20 H 0.066 0.934 21 H 0.092 0.908 22 H 0.064 0.936 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.295 0.705 26 H 0.100 0.900 27 H 0.142 0.858 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 7.349 -0.790 7.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 O -0.247 6.247 4 C -0.193 4.193 5 N -0.130 5.130 6 C -0.443 4.443 7 H 0.084 0.916 8 C -0.193 4.193 9 N -0.424 5.424 10 Si 0.817 3.183 11 H -0.175 1.175 12 H -0.180 1.180 13 H -0.178 1.178 14 C -0.014 4.014 15 C -0.151 4.151 16 C -0.139 4.139 17 C -0.161 4.161 18 C -0.134 4.134 19 C -0.163 4.163 20 H 0.085 0.915 21 H 0.111 0.889 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.160 0.840 28 H 0.171 0.829 29 H 0.166 0.834 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.073 6.380 -0.641 6.413 hybrid contribution 0.827 -0.131 -0.070 0.840 sum 0.900 6.249 -0.711 6.353 Atomic orbital electron populations 1.21724 0.90885 1.03452 1.02970 1.22119 0.95654 0.82917 0.98825 1.85666 1.18754 1.28060 1.92194 1.20711 0.83020 0.88880 1.26719 1.67162 1.07100 1.31521 1.07222 1.20663 0.88488 0.98145 1.37007 0.91643 1.27409 1.07106 0.92932 0.91875 1.69740 1.40546 1.03069 1.29090 0.84905 0.73062 0.79731 0.80558 1.17512 1.17954 1.17798 1.18850 0.95380 0.91301 0.95880 1.21256 0.97605 0.97289 0.98997 1.21245 1.00550 0.91965 1.00174 1.21438 0.96792 0.99999 0.97859 1.21306 0.96754 0.95720 0.99617 1.21442 1.01098 0.94002 0.99739 0.91523 0.88934 0.91730 0.95851 0.95869 0.89421 0.88198 0.84021 0.82911 0.83428 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 10.28 71.98 0.74 -3.63 16 2 C 0.08 3.75 6.03 71.98 0.43 4.19 16 3 O -0.34 -17.59 10.01 -84.52 -0.85 -18.43 16 4 C 0.00 0.27 7.35 86.88 0.64 0.90 16 5 N -0.41 -24.53 8.93 -299.82 -2.68 -27.21 16 6 C -0.29 -16.56 7.69 85.11 0.65 -15.90 16 7 H 0.07 3.67 5.47 -2.91 -0.02 3.65 16 8 C 0.03 1.33 5.53 85.42 0.47 1.81 16 9 N -0.80 -43.35 13.59 21.94 0.30 -43.06 16 10 Si 1.00 38.02 29.57 68.60 2.03 40.05 16 11 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 12 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 13 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 14 C -0.01 -0.56 5.07 -20.10 -0.10 -0.66 16 15 C -0.13 -5.98 7.59 22.61 0.17 -5.80 16 16 C -0.12 -4.29 10.03 22.22 0.22 -4.07 16 17 C -0.14 -4.36 10.04 22.38 0.22 -4.13 16 18 C -0.12 -3.82 10.03 22.22 0.22 -3.60 16 19 C -0.14 -6.00 9.70 22.62 0.22 -5.78 16 20 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 21 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 22 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.02 1.14 8.11 -2.39 -0.02 1.12 16 24 H 0.02 1.15 8.11 -2.39 -0.02 1.13 16 25 H 0.30 14.03 8.29 -92.71 -0.77 13.26 16 26 H 0.10 4.94 6.74 -2.91 -0.02 4.92 16 27 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -68.37 266.12 3.83 -64.54 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.13 Total: 20.77 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.90 Total: -36.67 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -2.38 Total: -70.26 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.85 Total: -18.43 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -68.37 3.83 -64.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714559923.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.201 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds