Wall clock time and date at job start Mon Mar 30 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47110 * 2 1 4 4 H 1.09003 * 109.47334 * 305.23681 * 3 2 1 5 5 C 1.50697 * 109.47293 * 185.23974 * 3 2 1 6 6 H 1.07998 * 119.99971 * 268.15063 * 5 3 2 7 7 C 1.37877 * 120.00210 * 88.14173 * 5 3 2 8 8 N 1.31515 * 119.99566 * 353.35639 * 7 5 3 9 9 Si 1.86799 * 119.99940 * 173.35628 * 7 5 3 10 10 H 1.48498 * 109.47266 * 60.00495 * 9 7 5 11 11 H 1.48509 * 109.46894 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47467 * 299.99822 * 9 7 5 13 13 N 1.46903 * 109.47225 * 65.23796 * 3 2 1 14 14 C 1.47447 * 110.99897 * 59.15633 * 13 3 2 15 15 C 1.54319 * 107.23139 * 123.25748 * 14 13 3 16 16 H 1.09005 * 110.85296 * 263.82871 * 15 14 13 17 17 F 1.39897 * 110.70203 * 140.66849 * 15 14 13 18 18 C 1.55137 * 103.02076 * 22.28464 * 15 14 13 19 19 H 1.09000 * 111.02352 * 82.45033 * 18 15 14 20 20 F 1.39904 * 110.99001 * 206.25484 * 18 15 14 21 21 C 1.47842 * 110.99846 * 180.02562 * 13 3 2 22 22 H 1.08991 * 109.47531 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47428 * 300.00346 * 1 2 3 24 24 H 1.09001 * 109.46900 * 59.99941 * 1 2 3 25 25 H 1.09000 * 109.46812 * 240.00087 * 2 1 3 26 26 H 1.09001 * 109.46900 * 120.00059 * 2 1 3 27 27 H 0.96994 * 120.00230 * 354.55361 * 8 7 5 28 28 H 1.08994 * 109.88845 * 242.66469 * 14 13 3 29 29 H 1.09005 * 109.88362 * 3.85403 * 14 13 3 30 30 H 1.09000 * 110.37545 * 332.46145 * 21 13 3 31 31 H 1.08998 * 110.37717 * 94.69850 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6021 1.9827 -0.8394 5 6 3.5414 1.4445 -0.1297 6 1 4.1599 1.4470 0.7556 7 6 4.1255 1.4431 -1.3787 8 7 3.3793 1.3082 -2.4533 9 14 5.9764 1.6327 -1.5444 10 1 6.6538 0.5208 -0.8304 11 1 6.3507 1.5998 -2.9812 12 1 6.3961 2.9289 -0.9537 13 7 1.6563 2.0976 1.2577 14 6 2.2154 1.3810 2.4187 15 6 3.0578 2.3957 3.2199 16 1 4.1112 2.3258 2.9483 17 9 2.8895 2.2017 4.5951 18 6 2.4680 3.7623 2.7825 19 1 1.5672 3.9988 3.3489 20 9 3.4180 4.7816 2.9084 21 6 2.1329 3.4966 1.2932 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.4298 1.1307 -2.3653 28 1 1.4076 0.9962 3.0411 29 1 2.8476 0.5606 2.0787 30 1 3.0253 3.6093 0.6776 31 1 1.3494 4.1732 0.9519 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714561924.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:51 Heat of formation + Delta-G solvation = -109.159281 kcal Electronic energy + Delta-G solvation = -15879.117451 eV Core-core repulsion = 13023.664221 eV Total energy + Delta-G solvation = -2855.453230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.74583 -47.01247 -38.33499 -34.06804 -31.85144 -29.18093 -28.10817 -25.81735 -23.24675 -21.69959 -21.03343 -19.30470 -17.27229 -16.99259 -16.06982 -15.05028 -14.79140 -14.59861 -14.42815 -13.84397 -13.48119 -13.11333 -12.87814 -12.54577 -12.31345 -12.00934 -11.64535 -11.13347 -10.97824 -10.78815 -10.71157 -10.45494 -10.21872 -9.94466 -9.87976 -9.78996 -9.09288 -8.50330 -7.41192 -6.49274 -4.28228 3.34477 3.36492 3.53984 4.32797 4.40229 4.52415 4.66455 4.87219 5.00689 5.20158 5.32472 5.65048 5.86099 5.96285 6.07692 6.18525 6.26126 6.27826 6.44401 6.59342 6.68175 6.77311 6.89364 7.15569 7.20607 7.65562 7.79196 8.04110 8.32136 8.66116 9.45856 10.85269 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.012796 C = 0.009725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.750043 B = 2187.649253 C = 2878.498586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.187 3.813 4 H 0.049 0.951 5 C -0.629 4.629 6 H 0.050 0.950 7 C 0.031 3.969 8 N -0.901 5.901 9 Si 1.057 2.943 10 H -0.288 1.288 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.514 5.514 14 C 0.029 3.971 15 C 0.047 3.953 16 H 0.102 0.898 17 F -0.209 7.209 18 C 0.057 3.943 19 H 0.102 0.898 20 F -0.205 7.205 21 C 0.026 3.974 22 H 0.031 0.969 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.273 0.727 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.436 1.414 7.475 7.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.080 3.920 4 H 0.067 0.933 5 C -0.668 4.668 6 H 0.068 0.932 7 C -0.175 4.175 8 N -0.535 5.535 9 Si 0.885 3.115 10 H -0.214 1.214 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.238 5.238 14 C -0.100 4.100 15 C 0.009 3.991 16 H 0.120 0.880 17 F -0.190 7.190 18 C 0.020 3.980 19 H 0.119 0.881 20 F -0.186 7.186 21 C -0.102 4.102 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.757 1.559 6.392 6.810 hybrid contribution -0.202 -0.160 1.176 1.204 sum -1.959 1.399 7.568 7.941 Atomic orbital electron populations 1.21763 0.97863 0.99186 1.01327 1.21736 0.93349 0.99080 1.00664 1.19709 0.94406 0.90765 0.87079 0.93341 1.22416 0.91877 1.57398 0.95084 0.93152 1.25724 1.06505 0.93183 0.92135 1.70793 1.08524 1.43435 1.30767 0.83703 0.74710 0.76700 0.76350 1.21393 1.20620 1.21287 1.64079 1.55257 1.00653 1.03828 1.23226 0.97140 0.96808 0.92805 1.23535 1.02752 0.96584 0.76186 0.88005 1.92777 1.97120 1.96133 1.32993 1.23347 0.90077 0.84331 1.00239 0.88057 1.92796 1.67015 1.61682 1.97114 1.23390 1.02045 0.92090 0.92686 0.94944 0.92643 0.93844 0.92453 0.93583 0.91562 0.90702 0.89775 0.89525 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 37.16 0.36 -2.24 16 2 C -0.11 -2.31 5.08 -26.73 -0.14 -2.45 16 3 C 0.19 4.25 1.42 -68.86 -0.10 4.15 16 4 H 0.05 1.23 7.00 -51.93 -0.36 0.87 16 5 C -0.63 -15.81 6.04 -34.44 -0.21 -16.02 16 6 H 0.05 1.27 6.57 -52.49 -0.34 0.93 16 7 C 0.03 0.83 5.45 -17.82 -0.10 0.74 16 8 N -0.90 -25.37 13.55 55.43 0.75 -24.62 16 9 Si 1.06 23.93 29.91 -169.99 -5.08 18.85 16 10 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.51 -10.17 4.67 -224.65 -1.05 -11.22 16 14 C 0.03 0.53 5.13 -2.83 -0.01 0.52 16 15 C 0.05 0.82 4.48 -24.91 -0.11 0.71 16 16 H 0.10 1.83 8.00 -51.93 -0.42 1.41 16 17 F -0.21 -3.62 17.18 2.25 0.04 -3.58 16 18 C 0.06 0.97 4.66 -24.57 -0.11 0.86 16 19 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 20 F -0.21 -3.70 17.24 2.25 0.04 -3.66 16 21 C 0.03 0.50 6.30 -2.28 -0.01 0.48 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.98 7.76 -51.93 -0.40 0.57 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.32 7.75 -51.93 -0.40 0.92 16 26 H 0.05 0.94 6.31 -51.93 -0.33 0.61 16 27 H 0.27 7.62 6.42 -40.82 -0.26 7.36 16 28 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.08 1.66 5.33 -51.93 -0.28 1.39 16 30 H 0.09 1.89 6.58 -51.93 -0.34 1.54 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 254.62 15.07 3.84 3.84 Total: -1.00 -26.57 254.62 -5.94 -32.51 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.04 Total: 1.15 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.43 Total: -13.26 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.30 Total: -35.84 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.08 Total: -7.25 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.85 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.57 -5.94 -32.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714561924.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.651 kcal (2) G-P(sol) polarization free energy of solvation -26.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds