Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.47840 * 111.00042 * 290.83715 * 12 11 10 14 14 C 1.54908 * 104.79993 * 213.63812 * 13 12 11 15 15 H 1.08995 * 110.99249 * 155.15996 * 14 13 12 16 16 F 1.39899 * 110.98706 * 278.98119 * 14 13 12 17 17 C 1.55139 * 101.65097 * 37.06773 * 14 13 12 18 18 H 1.09004 * 110.85636 * 82.80216 * 17 14 13 19 19 F 1.39898 * 110.70569 * 205.96380 * 17 14 13 20 20 C 1.47446 * 110.99975 * 169.99603 * 12 11 10 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 27 27 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 28 28 H 1.09007 * 110.37423 * 332.47046 * 13 12 11 29 29 H 1.09005 * 110.37714 * 94.80769 * 13 12 11 30 30 H 1.09000 * 109.88689 * 242.66226 * 20 12 11 31 31 H 1.08994 * 109.88875 * 3.68662 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4346 -6.1037 -0.0213 13 6 3.1531 -6.1815 -1.3110 14 6 3.3916 -7.6949 -1.5404 15 1 3.5050 -7.9158 -2.6017 16 9 4.5013 -8.1427 -0.8159 17 6 2.0797 -8.3068 -0.9824 18 1 1.2864 -8.2709 -1.7291 19 9 2.2913 -9.6207 -0.5509 20 6 1.7474 -7.3872 0.2114 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8718 -3.6005 -0.9002 25 1 2.8717 -3.6084 0.8798 26 1 0.8531 -5.0490 0.8724 27 1 0.8537 -5.0406 -0.9075 28 1 2.5405 -5.7681 -2.1123 29 1 4.1043 -5.6528 -1.2481 30 1 2.1059 -7.8372 1.1372 31 1 0.6710 -7.2262 0.2702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714562280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -109.474463 kcal Electronic energy + Delta-G solvation = -14822.575786 eV Core-core repulsion = 11967.108889 eV Total energy + Delta-G solvation = -2855.466897 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.31829 -47.22263 -38.53504 -34.15886 -32.18723 -29.85415 -28.85161 -26.16052 -23.26199 -21.61911 -21.15128 -20.00810 -17.43893 -16.89724 -16.22345 -15.85008 -15.40927 -14.87793 -14.58682 -14.25164 -14.02599 -13.64920 -13.49897 -12.85719 -12.41926 -12.32096 -11.73957 -11.46642 -11.35975 -10.97202 -10.83329 -10.68836 -10.55255 -10.44699 -9.71579 -9.37959 -9.07855 -8.36762 -8.30664 -6.01806 -4.03800 3.30345 3.37964 3.42517 3.73235 3.78900 4.14363 4.16427 4.40380 4.45812 4.63467 4.94868 5.13913 5.32688 5.34541 5.52392 5.61690 5.75862 5.85398 5.94890 6.20293 6.57777 6.65255 6.91568 7.12366 7.18562 7.65664 7.79128 7.98291 8.41601 9.03564 9.60561 11.09716 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.067808 B = 0.005065 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.830127 B = 5526.280752 C = 5792.427477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.104 4.104 11 C 0.049 3.951 12 N -0.522 5.522 13 C 0.020 3.980 14 C 0.059 3.941 15 H 0.106 0.894 16 F -0.190 7.190 17 C 0.046 3.954 18 H 0.108 0.892 19 F -0.196 7.196 20 C 0.017 3.983 21 H 0.260 0.740 22 H 0.016 0.984 23 H 0.013 0.987 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 -15.103 -3.860 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.078 4.078 12 N -0.246 5.246 13 C -0.108 4.108 14 C 0.021 3.979 15 H 0.124 0.876 16 F -0.170 7.170 17 C 0.008 3.992 18 H 0.125 0.875 19 F -0.177 7.177 20 C -0.111 4.111 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.326 -14.927 -3.417 15.670 hybrid contribution -0.185 0.740 -0.596 0.968 sum 3.140 -14.188 -4.013 15.075 Atomic orbital electron populations 1.69975 1.06080 1.26488 1.51098 1.25029 0.94845 0.99299 0.95337 0.86538 0.80167 0.83755 0.77569 1.19698 1.21047 1.20992 1.21285 0.93115 0.90986 1.50273 0.92585 1.19084 0.94014 0.91433 0.97116 1.21631 0.99178 0.92412 1.01024 1.22616 0.93499 0.91071 1.00634 1.63704 1.27624 1.02377 1.30934 1.23706 1.01779 0.93368 0.91973 1.23236 0.83123 0.95536 0.95969 0.87635 1.92851 1.53820 1.90291 1.80067 1.23508 0.98274 0.78708 0.98710 0.87453 1.92832 1.96125 1.37383 1.91372 1.23482 0.99415 0.90118 0.98128 0.93075 0.96552 0.96820 0.93472 0.92384 0.90733 0.94756 0.90954 0.88067 0.88946 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.11 5.20 -26.74 -0.14 -2.25 16 11 C 0.05 0.80 4.56 -3.83 -0.02 0.78 16 12 N -0.52 -7.59 5.16 -231.25 -1.19 -8.78 16 13 C 0.02 0.25 5.59 -2.30 -0.01 0.23 16 14 C 0.06 0.65 4.74 -24.59 -0.12 0.53 16 15 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 16 F -0.19 -2.67 16.97 2.25 0.04 -2.63 16 17 C 0.05 0.49 4.64 -24.91 -0.12 0.37 16 18 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 19 F -0.20 -2.49 16.92 2.25 0.04 -2.45 16 20 C 0.02 0.21 6.69 -2.83 -0.02 0.19 16 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.93 7.49 -51.93 -0.39 0.54 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 27 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 28 H 0.07 0.82 7.62 -51.92 -0.40 0.43 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.07 0.80 7.55 -51.93 -0.39 0.41 16 LS Contribution 265.71 15.07 4.00 4.00 Total: -1.00 -30.88 265.71 -6.87 -37.75 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -4.50 Total: -5.18 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.97 Total: -13.19 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.46 Total: -34.88 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.08 Total: -5.09 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.88 -6.87 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714562280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.725 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds