Wall clock time and date at job start Mon Mar 30 2020 03:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.47840 * 111.00042 * 290.83715 * 12 11 10 14 14 C 1.54908 * 104.79993 * 213.63812 * 13 12 11 15 15 H 1.08995 * 110.99249 * 155.15996 * 14 13 12 16 16 F 1.39899 * 110.98706 * 278.98119 * 14 13 12 17 17 C 1.55139 * 101.65097 * 37.06773 * 14 13 12 18 18 H 1.09004 * 110.85636 * 82.80216 * 17 14 13 19 19 F 1.39898 * 110.70569 * 205.96380 * 17 14 13 20 20 C 1.47446 * 110.99975 * 169.99603 * 12 11 10 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 27 27 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 28 28 H 1.09007 * 110.37423 * 332.47046 * 13 12 11 29 29 H 1.09005 * 110.37714 * 94.80769 * 13 12 11 30 30 H 1.09000 * 109.88689 * 242.66226 * 20 12 11 31 31 H 1.08994 * 109.88875 * 3.68662 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 7 2.4346 -6.1037 -0.0213 13 6 3.1531 -6.1815 -1.3110 14 6 3.3916 -7.6949 -1.5404 15 1 3.5050 -7.9158 -2.6017 16 9 4.5013 -8.1427 -0.8159 17 6 2.0797 -8.3068 -0.9824 18 1 1.2864 -8.2709 -1.7291 19 9 2.2913 -9.6207 -0.5509 20 6 1.7474 -7.3872 0.2114 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8718 -3.6005 -0.9002 25 1 2.8717 -3.6084 0.8798 26 1 0.8531 -5.0490 0.8724 27 1 0.8537 -5.0406 -0.9075 28 1 2.5405 -5.7681 -2.1123 29 1 4.1043 -5.6528 -1.2481 30 1 2.1059 -7.8372 1.1372 31 1 0.6710 -7.2262 0.2702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714562280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:08 Heat of formation + Delta-G solvation = -129.346664 kcal Electronic energy + Delta-G solvation = -14823.437509 eV Core-core repulsion = 11967.108889 eV Total energy + Delta-G solvation = -2856.328620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.25099 -48.17336 -39.62732 -35.98602 -33.96869 -31.26245 -29.84346 -27.86703 -24.88750 -22.77577 -22.25554 -21.52982 -18.62298 -18.17815 -17.78195 -16.79953 -16.56521 -16.49460 -15.81776 -15.60091 -15.21759 -14.86036 -14.56643 -14.28495 -14.05699 -13.56810 -13.28005 -13.05723 -12.65557 -12.62204 -12.30030 -12.23214 -11.83705 -11.55218 -11.41824 -11.36639 -11.07324 -10.55018 -9.39809 -8.20238 -6.30543 1.40203 1.41113 1.54183 2.41149 2.76965 2.89214 3.13422 3.18681 3.31427 3.55619 3.87294 4.15014 4.16025 4.22716 4.33927 4.48377 4.68663 4.71857 4.82209 4.95826 5.02549 5.08194 5.23646 5.52973 5.73345 5.86686 5.88501 5.93812 6.27642 6.86545 7.38830 8.91768 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.067808 B = 0.005065 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.830127 B = 5526.280752 C = 5792.427477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.090 4.090 11 C 0.062 3.938 12 N -0.540 5.540 13 C 0.016 3.984 14 C 0.057 3.943 15 H 0.144 0.856 16 F -0.210 7.210 17 C 0.049 3.951 18 H 0.144 0.856 19 F -0.208 7.208 20 C 0.014 3.986 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.004 1.004 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -15.446 -4.827 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.128 4.128 11 C -0.065 4.065 12 N -0.265 5.265 13 C -0.112 4.112 14 C 0.020 3.980 15 H 0.161 0.839 16 F -0.191 7.191 17 C 0.012 3.988 18 H 0.161 0.839 19 F -0.189 7.189 20 C -0.114 4.114 21 H 0.072 0.928 22 H 0.010 0.990 23 H 0.014 0.986 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.815 -15.290 -4.383 16.357 hybrid contribution -0.343 0.833 -0.278 0.943 sum 3.472 -14.457 -4.661 15.581 Atomic orbital electron populations 1.70092 1.07712 1.27688 1.51854 1.25944 0.95754 1.03242 0.94760 0.85428 0.79057 0.78921 0.77823 1.18772 1.20211 1.20450 1.21725 0.93475 0.92508 1.50305 0.92481 1.18981 0.94394 0.92903 0.94979 1.21368 0.98002 0.92779 1.00662 1.22314 0.93238 0.89950 1.01023 1.63538 1.27523 1.02778 1.32651 1.23758 1.01260 0.94712 0.91443 1.23514 0.82495 0.94236 0.97729 0.83860 1.92810 1.55065 1.90428 1.80816 1.23660 0.99061 0.77525 0.98539 0.83879 1.92812 1.96257 1.38227 1.91583 1.23481 0.99997 0.89274 0.98629 0.92765 0.98994 0.98561 0.92919 0.93538 0.91133 0.93680 0.89392 0.89144 0.90046 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.64 5.20 30.59 0.16 -3.48 16 11 C 0.06 1.98 4.56 86.30 0.39 2.38 16 12 N -0.54 -14.98 5.16 -885.55 -4.57 -19.55 16 13 C 0.02 0.36 5.59 86.77 0.49 0.85 16 14 C 0.06 1.11 4.74 31.98 0.15 1.26 16 15 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 16 F -0.21 -5.62 16.97 44.97 0.76 -4.86 16 17 C 0.05 0.92 4.64 31.77 0.15 1.07 16 18 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 19 F -0.21 -4.84 16.92 44.97 0.76 -4.08 16 20 C 0.01 0.33 6.69 86.65 0.58 0.90 16 21 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 22 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 23 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 24 H 0.05 2.04 7.49 -2.38 -0.02 2.03 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 2.28 8.03 -2.39 -0.02 2.27 16 27 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 28 H 0.09 1.76 7.62 -2.38 -0.02 1.74 16 29 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 31 H 0.09 1.73 7.55 -2.39 -0.02 1.71 16 Total: -1.00 -66.27 265.71 3.12 -63.15 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: 1.10 Total: 0.88 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 2.76 Total: -25.68 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -4.29 Total: -75.61 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 1.52 Total: -8.93 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.27 3.12 -63.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714562280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.195 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds