Wall clock time and date at job start Mon Mar 30 2020 03:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00186 * 2 1 4 4 H 1.48507 * 109.46893 * 239.99672 * 3 2 1 5 5 H 1.48503 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47335 * 119.99642 * 3 2 1 7 7 C 1.37875 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00621 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99476 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47097 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47238 * 174.66584 * 11 10 9 13 13 C 1.47449 * 111.00246 * 54.38924 * 12 11 10 14 14 C 1.54319 * 107.23258 * 123.25511 * 13 12 11 15 15 H 1.09000 * 110.70921 * 263.90660 * 14 13 12 16 16 F 1.39904 * 110.85549 * 140.73900 * 14 13 12 17 17 C 1.55143 * 103.01730 * 22.29128 * 14 13 12 18 18 H 1.08996 * 110.99049 * 82.43423 * 17 14 13 19 19 F 1.39902 * 110.99023 * 206.25239 * 17 14 13 20 20 C 1.47839 * 111.00255 * 175.23448 * 12 11 10 21 21 H 0.97007 * 119.99889 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47453 * 60.00141 * 9 7 2 23 23 H 1.08998 * 109.47201 * 299.99599 * 9 7 2 24 24 H 1.08998 * 109.47217 * 59.99931 * 10 9 7 25 25 H 1.09001 * 109.47492 * 299.99963 * 10 9 7 26 26 H 1.08993 * 109.47541 * 54.66322 * 11 10 9 27 27 H 1.09003 * 109.47164 * 294.66183 * 11 10 9 28 28 H 1.08993 * 109.89298 * 242.67001 * 13 12 11 29 29 H 1.09010 * 109.88381 * 3.85554 * 13 12 11 30 30 H 1.08994 * 110.37485 * 332.46410 * 20 12 11 31 31 H 1.08999 * 110.37372 * 94.80426 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4295 -6.1007 -0.1276 13 6 3.4698 -6.0316 0.9152 14 6 3.4305 -7.3660 1.6892 15 1 2.8275 -7.2703 2.5921 16 9 4.7236 -7.7977 2.0036 17 6 2.7587 -8.3352 0.6810 18 1 3.4860 -8.7215 -0.0330 19 9 2.1094 -9.3802 1.3471 20 6 1.7375 -7.4024 -0.0166 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6241 -2.5566 0.8903 24 1 2.8719 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.7835 -5.0048 -0.8368 27 1 0.9275 -5.0870 0.9353 28 1 4.4485 -5.8987 0.4544 29 1 3.2611 -5.2036 1.5928 30 1 0.8378 -7.3033 0.5905 31 1 1.4883 -7.7852 -1.0063 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714562282.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:10 Heat of formation + Delta-G solvation = -127.788297 kcal Electronic energy + Delta-G solvation = -14785.990466 eV Core-core repulsion = 11929.729422 eV Total energy + Delta-G solvation = -2856.261044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.19311 -48.45901 -39.81805 -35.99855 -33.99656 -31.20026 -29.84331 -27.78922 -24.88662 -23.04344 -22.55209 -21.13198 -18.67752 -18.45280 -17.78507 -16.59111 -16.47506 -16.43004 -16.12482 -15.93275 -15.35936 -14.77755 -14.57944 -14.35366 -14.04259 -13.65372 -13.45171 -12.95541 -12.62881 -12.50569 -12.37275 -12.23491 -12.05624 -11.65499 -11.41370 -11.30902 -11.10277 -10.53871 -9.47643 -8.19763 -6.30545 1.41101 1.43646 1.51597 2.41116 2.65049 2.86430 3.05429 3.13836 3.16797 3.62865 3.79818 4.08028 4.16023 4.20295 4.28784 4.45899 4.65805 4.71543 4.76257 4.94372 4.94892 5.10693 5.21790 5.51380 5.70653 5.79556 5.85559 5.88245 6.26171 6.86353 7.38879 8.91824 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.057609 B = 0.005195 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.921135 B = 5388.632468 C = 5719.849672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.096 4.096 11 C 0.060 3.940 12 N -0.525 5.525 13 C 0.016 3.984 14 C 0.048 3.952 15 H 0.112 0.888 16 F -0.205 7.205 17 C 0.063 3.937 18 H 0.129 0.871 19 F -0.206 7.206 20 C 0.020 3.980 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.008 1.008 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -15.301 1.672 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.134 4.134 11 C -0.068 4.068 12 N -0.249 5.249 13 C -0.113 4.113 14 C 0.010 3.990 15 H 0.130 0.870 16 F -0.186 7.186 17 C 0.026 3.974 18 H 0.146 0.854 19 F -0.186 7.186 20 C -0.107 4.107 21 H 0.072 0.928 22 H 0.012 0.988 23 H 0.011 0.989 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.489 -15.181 1.203 16.188 hybrid contribution -0.288 0.913 0.879 1.300 sum 5.201 -14.268 2.083 15.329 Atomic orbital electron populations 1.70081 1.07763 1.27822 1.51681 1.25953 0.95742 1.03286 0.94738 0.85534 0.78307 0.78241 0.79176 1.19227 1.20863 1.19202 1.21671 0.93540 0.92440 1.50559 0.92256 1.18969 0.94410 0.92934 0.94957 1.21512 0.98144 0.92690 1.01006 1.22304 0.94020 0.89867 1.00595 1.63692 1.13156 1.02115 1.45951 1.23473 0.98588 0.95768 0.93427 1.23477 0.80418 0.95045 1.00023 0.87001 1.92826 1.40409 1.90881 1.94448 1.23347 0.95323 0.84998 0.93690 0.85370 1.92825 1.83397 1.59931 1.82473 1.23624 0.95785 0.88265 1.03066 0.92775 0.98803 0.98916 0.92682 0.92630 0.90494 0.94519 0.88404 0.90335 0.91439 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.10 -3.76 4.80 30.60 0.15 -3.61 16 11 C 0.06 1.88 4.85 86.30 0.42 2.30 16 12 N -0.52 -13.59 5.28 -885.54 -4.67 -18.26 16 13 C 0.02 0.38 6.02 86.65 0.52 0.90 16 14 C 0.05 1.02 4.55 31.78 0.14 1.16 16 15 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 16 F -0.20 -4.90 17.19 44.97 0.77 -4.13 16 17 C 0.06 1.23 4.66 31.98 0.15 1.38 16 18 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 19 F -0.21 -4.53 17.24 44.97 0.78 -3.76 16 20 C 0.02 0.42 6.54 86.78 0.57 0.99 16 21 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 22 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H 0.05 2.08 6.37 -2.39 -0.02 2.06 16 25 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.04 1.13 7.97 -2.39 -0.02 1.11 16 28 H 0.10 2.33 8.11 -2.39 -0.02 2.31 16 29 H 0.08 2.02 5.96 -2.38 -0.01 2.01 16 30 H 0.07 1.38 7.70 -2.39 -0.02 1.36 16 31 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -62.38 263.96 3.08 -59.29 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.11 Total: 2.43 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 2.79 Total: -25.40 kcal Atomic # 7 Polarization: -70.00 SS G_CDS: -4.39 Total: -74.38 kcal Atomic # 9 Polarization: -9.44 SS G_CDS: 1.55 Total: -7.89 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -62.38 3.08 -59.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714562282.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.496 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds