Wall clock time and date at job start Mon Mar 30 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.47841 * 111.00106 * 49.16057 * 12 11 10 14 14 C 1.54904 * 104.79409 * 146.36315 * 13 12 11 15 15 H 1.09001 * 110.99224 * 81.02173 * 14 13 12 16 16 F 1.39901 * 111.02267 * 204.81942 * 14 13 12 17 17 C 1.55132 * 101.65346 * 322.92752 * 14 13 12 18 18 H 1.09002 * 110.70611 * 277.26781 * 17 14 13 19 19 F 1.39909 * 110.85504 * 154.10817 * 17 14 13 20 20 C 1.47440 * 110.99948 * 170.00260 * 12 11 10 21 21 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 27 27 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 28 28 H 1.09009 * 110.37341 * 265.19091 * 13 12 11 29 29 H 1.08994 * 110.37599 * 27.53149 * 13 12 11 30 30 H 1.09010 * 109.89024 * 356.14967 * 20 12 11 31 31 H 1.09003 * 109.88938 * 117.16788 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4347 -6.1037 0.0018 13 6 3.4650 -5.9194 1.0459 14 6 3.7979 -7.3526 1.5305 15 1 4.4962 -7.8420 0.8516 16 9 4.3002 -7.3369 2.8361 17 6 2.4043 -8.0323 1.4793 18 1 1.8329 -7.8081 2.3800 19 9 2.5306 -9.4150 1.3072 20 6 1.7477 -7.3861 0.2414 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8718 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 0.8537 -5.0446 0.8914 27 1 0.8531 -5.0451 -0.8886 28 1 4.3517 -5.4457 0.6246 29 1 3.0696 -5.3231 1.8681 30 1 0.6891 -7.2096 0.4328 31 1 1.8641 -8.0368 -0.6254 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714562283.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:12 Heat of formation + Delta-G solvation = -128.720605 kcal Electronic energy + Delta-G solvation = -14812.265020 eV Core-core repulsion = 11955.963547 eV Total energy + Delta-G solvation = -2856.301472 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.18997 -48.45923 -39.82940 -35.99216 -33.98856 -31.21464 -29.85125 -27.79784 -24.87570 -23.10177 -22.35300 -21.35848 -18.62870 -18.37029 -17.76731 -16.69278 -16.49142 -16.48054 -16.10503 -15.86165 -15.32745 -14.68728 -14.60404 -14.20837 -14.11665 -13.85228 -13.35879 -13.08590 -12.67397 -12.51243 -12.33162 -12.21110 -11.99179 -11.57059 -11.46847 -11.38198 -11.09781 -10.54841 -9.47214 -8.20321 -6.30955 1.40941 1.41777 1.52841 2.40834 2.64703 2.87072 3.06241 3.13390 3.16159 3.63109 3.79971 4.08142 4.16041 4.18719 4.30171 4.47165 4.65846 4.69871 4.74063 4.93787 4.96128 5.10459 5.20582 5.51363 5.71322 5.78264 5.85611 5.86574 6.25865 6.86122 7.38486 8.91522 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.056085 B = 0.005287 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.124686 B = 5294.674936 C = 5613.248430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.098 4.098 11 C 0.059 3.941 12 N -0.524 5.524 13 C 0.020 3.980 14 C 0.060 3.940 15 H 0.129 0.871 16 F -0.207 7.207 17 C 0.050 3.950 18 H 0.112 0.888 19 F -0.203 7.203 20 C 0.020 3.980 21 H 0.263 0.737 22 H -0.006 1.006 23 H -0.008 1.008 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -15.053 2.123 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.135 4.135 11 C -0.068 4.068 12 N -0.249 5.249 13 C -0.108 4.108 14 C 0.023 3.977 15 H 0.147 0.853 16 F -0.188 7.188 17 C 0.013 3.987 18 H 0.130 0.870 19 F -0.184 7.184 20 C -0.108 4.108 21 H 0.072 0.928 22 H 0.012 0.988 23 H 0.010 0.990 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.577 -14.987 1.659 16.077 hybrid contribution -0.338 1.001 0.864 1.365 sum 5.239 -13.986 2.524 15.147 Atomic orbital electron populations 1.70088 1.07766 1.27759 1.51763 1.25962 0.95747 1.03307 0.94753 0.85472 0.78682 0.78549 0.78509 1.19766 1.20797 1.18785 1.21698 0.93544 0.92424 1.50427 0.92250 1.18974 0.94418 0.92979 0.94936 1.21515 0.98209 0.92758 1.01058 1.22355 0.93731 0.89714 1.01026 1.63702 1.13548 1.02075 1.45531 1.23571 0.97734 0.94991 0.94536 1.23391 0.95865 0.98023 0.80380 0.85349 1.92822 1.88943 1.97492 1.39563 1.23424 0.97401 0.76118 1.01807 0.86971 1.92832 1.96920 1.31728 1.96908 1.23471 0.98807 0.91450 0.97075 0.92781 0.98771 0.98987 0.92739 0.92562 0.94521 0.90325 0.87760 0.92086 0.89721 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.83 4.82 30.60 0.15 -3.68 16 11 C 0.06 1.86 4.82 86.31 0.42 2.28 16 12 N -0.52 -13.55 5.31 -885.55 -4.71 -18.25 16 13 C 0.02 0.48 5.11 86.77 0.44 0.92 16 14 C 0.06 1.27 4.66 31.98 0.15 1.42 16 15 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 16 F -0.21 -5.08 17.24 44.97 0.78 -4.31 16 17 C 0.05 1.00 4.55 31.77 0.14 1.15 16 18 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 19 F -0.20 -4.48 17.19 44.97 0.77 -3.70 16 20 C 0.02 0.41 6.69 86.64 0.58 0.99 16 21 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 22 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 23 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 24 H 0.05 2.07 6.47 -2.39 -0.02 2.06 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.04 1.14 7.96 -2.39 -0.02 1.12 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.06 1.62 7.02 -2.39 -0.02 1.60 16 30 H 0.08 1.62 7.49 -2.38 -0.02 1.61 16 31 H 0.11 2.00 8.11 -2.39 -0.02 1.98 16 Total: -1.00 -62.49 264.19 2.98 -59.51 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 1.10 Total: 2.35 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 2.72 Total: -25.43 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -4.42 Total: -74.41 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 1.55 Total: -8.01 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.49 2.98 -59.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714562283.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.215 kcal (2) G-P(sol) polarization free energy of solvation -62.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds