Wall clock time and date at job start Mon Mar 30 2020 03:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46986 * 2 1 4 4 H 1.08998 * 109.46960 * 306.27011 * 3 2 1 5 5 C 1.50697 * 109.47053 * 186.26717 * 3 2 1 6 6 H 1.07999 * 120.00045 * 244.94010 * 5 3 2 7 7 C 1.37871 * 120.00086 * 64.93919 * 5 3 2 8 8 N 1.31519 * 120.00425 * 193.11850 * 7 5 3 9 9 Si 1.86800 * 119.99899 * 13.12161 * 7 5 3 10 10 H 1.48505 * 109.47249 * 93.40799 * 9 7 5 11 11 H 1.48503 * 109.47111 * 213.40464 * 9 7 5 12 12 H 1.48498 * 109.47369 * 333.40398 * 9 7 5 13 13 N 1.46906 * 109.47266 * 66.26824 * 3 2 1 14 14 C 1.46903 * 110.99990 * 261.91619 * 13 3 2 15 15 C 1.52993 * 109.47187 * 174.79630 * 14 13 3 16 16 H 1.08998 * 115.55425 * 29.32508 * 15 14 13 17 17 C 1.52999 * 117.50015 * 175.00490 * 15 14 13 18 18 C 1.52992 * 60.00460 * 107.48604 * 17 15 14 19 19 F 1.39901 * 117.50022 * 252.51280 * 18 17 15 20 20 F 1.39899 * 117.50051 * 107.48984 * 18 17 15 21 21 H 1.09006 * 109.46704 * 182.39491 * 1 2 3 22 22 H 1.09000 * 109.46873 * 302.38876 * 1 2 3 23 23 H 1.08999 * 109.47069 * 62.39586 * 1 2 3 24 24 H 1.08998 * 109.47178 * 239.99598 * 2 1 3 25 25 H 1.09000 * 109.46844 * 119.99563 * 2 1 3 26 26 H 0.96996 * 120.00199 * 179.97438 * 8 7 5 27 27 H 1.00897 * 110.99860 * 137.96341 * 13 3 2 28 28 H 1.09006 * 109.46993 * 294.79545 * 14 13 3 29 29 H 1.09003 * 109.47314 * 54.79158 * 14 13 3 30 30 H 1.09004 * 117.49929 * 214.97815 * 17 15 14 31 31 H 1.08999 * 117.49761 * 359.96984 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5879 1.9876 -0.8285 5 6 3.5390 1.4453 -0.1551 6 1 4.1641 1.8114 0.6459 7 6 4.1124 0.9806 -1.3196 8 7 5.4045 0.7392 -1.3657 9 14 3.0543 0.6938 -2.8320 10 1 3.0722 1.9084 -3.6863 11 1 3.5900 -0.4592 -3.5995 12 1 1.6595 0.4041 -2.4127 13 7 1.6777 2.0900 1.2679 14 6 0.4610 2.8991 1.1170 15 6 0.0428 3.4508 2.4813 16 1 0.8545 3.6204 3.1887 17 6 -1.1412 4.4191 2.5192 18 6 -1.3030 2.9921 3.0465 19 9 -2.0570 2.1003 2.2761 20 9 -1.3977 2.8222 4.4319 21 1 -0.3633 -1.0268 0.0429 22 1 -0.3633 0.5505 0.8678 23 1 -0.3633 0.4762 -0.9107 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 5.8078 0.4119 -2.1848 27 1 2.4413 2.6475 1.6203 28 1 0.6572 3.7266 0.4351 29 1 -0.3402 2.2791 0.7147 30 1 -1.1085 5.2257 3.2516 31 1 -1.6219 4.6635 1.5719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717357852.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:58 Heat of formation + Delta-G solvation = -72.703449 kcal Electronic energy + Delta-G solvation = -15254.556375 eV Core-core repulsion = 12400.683989 eV Total energy + Delta-G solvation = -2853.872386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.53988 -47.22433 -37.46159 -35.62274 -32.31298 -31.16482 -27.93611 -24.68374 -22.52105 -22.38848 -20.82052 -19.62360 -17.70832 -17.07021 -16.45855 -15.89505 -15.15594 -14.38634 -14.08288 -13.84383 -13.64978 -13.44155 -13.34035 -12.86699 -12.69850 -12.23224 -11.90871 -11.57719 -11.45196 -11.09081 -10.83502 -10.46754 -10.19133 -9.93546 -9.70498 -9.33274 -9.13112 -8.51421 -7.52436 -6.15900 -4.13076 3.08069 3.24564 3.25052 3.34930 3.38438 4.18658 4.37430 4.42213 4.71550 5.14891 5.27198 5.35419 5.45627 5.63989 5.73703 5.94044 6.08303 6.09258 6.19858 6.30046 6.65534 6.78415 7.00478 7.04969 7.42247 7.61722 7.90281 8.28982 8.55744 8.91188 9.49009 10.96840 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.046037 B = 0.007509 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.064593 B = 3727.938287 C = 3939.741212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.192 3.808 4 H 0.004 0.996 5 C -0.533 4.533 6 H 0.077 0.923 7 C 0.077 3.923 8 N -0.891 5.891 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.678 5.678 14 C 0.073 3.927 15 C -0.131 4.131 16 H 0.131 0.869 17 C -0.180 4.180 18 C 0.192 3.808 19 F -0.160 7.160 20 F -0.166 7.166 21 H 0.036 0.964 22 H 0.059 0.941 23 H 0.036 0.964 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.264 0.736 27 H 0.341 0.659 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.616 5.894 5.288 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.021 0.979 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.126 4.126 8 N -0.528 5.528 9 Si 0.690 3.310 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.172 1.172 13 N -0.309 5.309 14 C -0.057 4.057 15 C -0.150 4.150 16 H 0.149 0.851 17 C -0.218 4.218 18 C 0.156 3.844 19 F -0.140 7.140 20 F -0.146 7.146 21 H 0.055 0.945 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.137 0.863 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.818 5.226 5.425 14.868 hybrid contribution -0.209 0.383 -1.265 1.338 sum -13.028 5.610 4.160 14.782 Atomic orbital electron populations 1.21969 0.98613 0.99910 1.00640 1.21877 0.92716 0.99281 1.00930 1.19448 0.95669 0.90886 0.85623 0.97886 1.21190 0.89357 1.43782 1.02714 0.90529 1.24904 0.94783 0.94131 0.98766 1.69960 1.11088 1.44108 1.27672 0.87206 0.82550 0.77950 0.83290 1.20843 1.21238 1.17193 1.60514 1.05357 1.33752 1.31316 1.21754 0.96296 0.96270 0.91361 1.23764 0.91812 0.98203 1.01251 0.85084 1.24395 1.01142 0.91941 1.04348 1.20106 0.98879 0.91720 0.73715 1.92996 1.77414 1.70087 1.73511 1.92999 1.96845 1.96268 1.28537 0.94501 0.92180 0.94451 0.93038 0.92206 0.92593 0.84091 0.94336 0.89735 0.86256 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.01 37.16 0.33 -2.59 16 2 C -0.11 -2.43 4.82 -26.73 -0.13 -2.56 16 3 C 0.19 4.42 1.75 -68.86 -0.12 4.30 16 4 H 0.00 0.08 6.38 -51.93 -0.33 -0.25 16 5 C -0.53 -14.49 9.02 -34.44 -0.31 -14.80 16 6 H 0.08 2.24 7.72 -52.49 -0.41 1.84 16 7 C 0.08 2.18 5.35 -17.82 -0.10 2.08 16 8 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 9 Si 0.86 20.88 25.74 -169.99 -4.38 16.50 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.25 -5.66 5.38 56.52 0.30 -5.36 16 13 N -0.68 -13.30 6.12 -107.95 -0.66 -13.96 16 14 C 0.07 1.17 5.26 -3.83 -0.02 1.15 16 15 C -0.13 -1.72 5.98 -90.62 -0.54 -2.26 16 16 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 17 C -0.18 -1.84 10.22 -26.74 -0.27 -2.12 16 18 C 0.19 2.62 5.20 -26.73 -0.14 2.48 16 19 F -0.16 -2.44 16.48 2.25 0.04 -2.40 16 20 F -0.17 -2.39 17.60 2.25 0.04 -2.35 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 1.11 5.82 -51.93 -0.30 0.81 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 1.20 4.82 -51.93 -0.25 0.94 16 25 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.34 6.61 8.03 -39.29 -0.32 6.30 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.41 4.39 -51.93 -0.23 1.19 16 30 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 258.57 15.07 3.90 3.90 Total: -1.00 -29.34 258.57 -5.61 -34.95 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.02 Total: 3.63 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.29 Total: -14.32 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.11 Total: -39.91 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.08 Total: -4.75 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.38 Total: 16.50 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.34 -5.61 -34.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717357852.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.752 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds