Wall clock time and date at job start Mon Mar 30 2020 03:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46986 * 2 1 4 4 H 1.08998 * 109.46960 * 306.27011 * 3 2 1 5 5 C 1.50697 * 109.47053 * 186.26717 * 3 2 1 6 6 H 1.07999 * 120.00045 * 244.94010 * 5 3 2 7 7 C 1.37871 * 120.00086 * 64.93919 * 5 3 2 8 8 N 1.31519 * 120.00425 * 193.11850 * 7 5 3 9 9 Si 1.86800 * 119.99899 * 13.12161 * 7 5 3 10 10 H 1.48505 * 109.47249 * 93.40799 * 9 7 5 11 11 H 1.48503 * 109.47111 * 213.40464 * 9 7 5 12 12 H 1.48498 * 109.47369 * 333.40398 * 9 7 5 13 13 N 1.46906 * 109.47266 * 66.26824 * 3 2 1 14 14 C 1.46903 * 110.99990 * 261.91619 * 13 3 2 15 15 C 1.52993 * 109.47187 * 174.79630 * 14 13 3 16 16 H 1.08998 * 115.55425 * 29.32508 * 15 14 13 17 17 C 1.52999 * 117.50015 * 175.00490 * 15 14 13 18 18 C 1.52992 * 60.00460 * 107.48604 * 17 15 14 19 19 F 1.39901 * 117.50022 * 252.51280 * 18 17 15 20 20 F 1.39899 * 117.50051 * 107.48984 * 18 17 15 21 21 H 1.09006 * 109.46704 * 182.39491 * 1 2 3 22 22 H 1.09000 * 109.46873 * 302.38876 * 1 2 3 23 23 H 1.08999 * 109.47069 * 62.39586 * 1 2 3 24 24 H 1.08998 * 109.47178 * 239.99598 * 2 1 3 25 25 H 1.09000 * 109.46844 * 119.99563 * 2 1 3 26 26 H 0.96996 * 120.00199 * 179.97438 * 8 7 5 27 27 H 1.00897 * 110.99860 * 137.96341 * 13 3 2 28 28 H 1.09006 * 109.46993 * 294.79545 * 14 13 3 29 29 H 1.09003 * 109.47314 * 54.79158 * 14 13 3 30 30 H 1.09004 * 117.49929 * 214.97815 * 17 15 14 31 31 H 1.08999 * 117.49761 * 359.96984 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5879 1.9876 -0.8285 5 6 3.5390 1.4453 -0.1551 6 1 4.1641 1.8114 0.6459 7 6 4.1124 0.9806 -1.3196 8 7 5.4045 0.7392 -1.3657 9 14 3.0543 0.6938 -2.8320 10 1 3.0722 1.9084 -3.6863 11 1 3.5900 -0.4592 -3.5995 12 1 1.6595 0.4041 -2.4127 13 7 1.6777 2.0900 1.2679 14 6 0.4610 2.8991 1.1170 15 6 0.0428 3.4508 2.4813 16 1 0.8545 3.6204 3.1887 17 6 -1.1412 4.4191 2.5192 18 6 -1.3030 2.9921 3.0465 19 9 -2.0570 2.1003 2.2761 20 9 -1.3977 2.8222 4.4319 21 1 -0.3633 -1.0268 0.0429 22 1 -0.3633 0.5505 0.8678 23 1 -0.3633 0.4762 -0.9107 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 5.8078 0.4119 -2.1848 27 1 2.4413 2.6475 1.6203 28 1 0.6572 3.7266 0.4351 29 1 -0.3402 2.2791 0.7147 30 1 -1.1085 5.2257 3.2516 31 1 -1.6219 4.6635 1.5719 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717357852.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:58 Heat of formation + Delta-G solvation = -92.431129 kcal Electronic energy + Delta-G solvation = -15255.411832 eV Core-core repulsion = 12400.683989 eV Total energy + Delta-G solvation = -2854.727842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.59466 -48.29504 -38.84041 -36.99840 -34.34280 -32.74104 -29.68041 -26.25590 -24.13363 -23.44659 -21.99515 -21.35619 -19.11698 -18.62605 -17.79035 -17.10390 -16.67309 -15.91671 -15.71014 -15.02040 -14.93638 -14.81863 -14.53624 -14.46579 -14.00583 -13.84134 -13.47966 -13.16074 -12.81560 -12.72657 -12.53774 -11.94280 -11.73807 -11.67256 -11.12930 -11.06905 -10.78547 -10.60978 -9.10430 -8.32717 -6.34068 1.33485 1.37797 1.48196 2.13550 2.26029 2.34235 3.01505 3.12517 3.47576 3.70961 3.90718 4.26145 4.43748 4.45219 4.50084 4.62022 4.67404 4.70380 4.88123 4.91387 5.05162 5.18884 5.26108 5.39974 5.54924 5.78598 5.99801 6.48668 6.65651 6.86193 7.32498 8.83511 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.046037 B = 0.007509 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.064593 B = 3727.938287 C = 3939.741212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.198 3.802 4 H 0.006 0.994 5 C -0.535 4.535 6 H 0.040 0.960 7 C 0.020 3.980 8 N -0.941 5.941 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.224 1.224 13 N -0.684 5.684 14 C 0.073 3.927 15 C -0.142 4.142 16 H 0.135 0.865 17 C -0.138 4.138 18 C 0.167 3.833 19 F -0.173 7.173 20 F -0.175 7.175 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.044 0.956 26 H 0.266 0.734 27 H 0.339 0.661 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.149 0.851 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 6.832 4.865 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C 0.088 3.912 4 H 0.024 0.976 5 C -0.574 4.574 6 H 0.058 0.942 7 C -0.178 4.178 8 N -0.580 5.580 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.147 1.147 13 N -0.315 5.315 14 C -0.056 4.056 15 C -0.162 4.162 16 H 0.153 0.847 17 C -0.175 4.175 18 C 0.130 3.870 19 F -0.154 7.154 20 F -0.155 7.155 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.157 0.843 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.267 6.178 5.022 17.218 hybrid contribution 0.600 0.116 -1.028 1.196 sum -14.667 6.295 3.995 16.453 Atomic orbital electron populations 1.21863 0.95682 1.01362 1.01287 1.21809 0.95294 0.98155 0.99706 1.19290 0.92636 0.91990 0.87238 0.97635 1.21513 0.91669 1.42602 1.01574 0.94220 1.25768 0.95921 0.94093 1.02052 1.70099 1.13224 1.46063 1.28645 0.86193 0.81877 0.77848 0.79084 1.20222 1.21358 1.14698 1.60465 1.06569 1.34953 1.29467 1.21764 0.94289 0.96022 0.93503 1.23663 0.92587 1.00227 0.99706 0.84703 1.24555 0.97147 0.90440 1.05391 1.20521 0.99195 0.93902 0.73338 1.92961 1.77689 1.70918 1.73790 1.92977 1.96887 1.96469 1.29212 0.92695 0.91869 0.93464 0.94143 0.93679 0.92529 0.84312 0.93499 0.90043 0.83342 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.01 71.98 0.65 -4.45 16 2 C -0.11 -4.79 4.82 30.60 0.15 -4.65 16 3 C 0.20 8.94 1.75 44.17 0.08 9.02 16 4 H 0.01 0.27 6.38 -2.39 -0.02 0.25 16 5 C -0.54 -29.69 9.02 25.60 0.23 -29.46 16 6 H 0.04 2.42 7.72 -2.91 -0.02 2.40 16 7 C 0.02 1.16 5.35 84.65 0.45 1.61 16 8 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 9 Si 0.93 42.78 25.74 68.60 1.77 44.54 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.22 -9.41 5.38 99.48 0.54 -8.87 16 13 N -0.68 -26.32 6.12 -495.44 -3.03 -29.35 16 14 C 0.07 2.20 5.26 86.30 0.45 2.66 16 15 C -0.14 -3.39 5.98 -10.79 -0.06 -3.46 16 16 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 17 C -0.14 -2.27 10.22 30.59 0.31 -1.95 16 18 C 0.17 4.14 5.20 30.59 0.16 4.30 16 19 F -0.17 -4.93 16.48 44.97 0.74 -4.19 16 20 F -0.17 -4.73 17.60 44.97 0.79 -3.94 16 21 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 22 H 0.06 2.18 5.82 -2.39 -0.01 2.17 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.04 1.81 4.82 -2.39 -0.01 1.80 16 25 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 27 H 0.34 13.21 8.03 -89.70 -0.72 12.49 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.08 2.51 4.39 -2.39 -0.01 2.50 16 30 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -64.06 258.57 3.24 -60.82 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.25 Total: 16.13 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 2.42 Total: -26.38 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.73 Total: -86.98 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 1.53 Total: -8.13 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.77 Total: 44.54 kcal Total: -64.06 3.24 -60.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717357852.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.610 kcal (2) G-P(sol) polarization free energy of solvation -64.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds