Wall clock time and date at job start Mon Mar 30 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99725 * 2 1 4 4 H 1.08001 * 119.99941 * 321.62175 * 3 2 1 5 5 C 1.38814 * 119.99992 * 141.62851 * 3 2 1 6 6 N 1.31622 * 120.00053 * 157.28419 * 5 3 2 7 7 Si 1.86796 * 119.99785 * 337.28576 * 5 3 2 8 8 H 1.48499 * 109.47495 * 95.68019 * 7 5 3 9 9 H 1.48509 * 109.47020 * 215.67826 * 7 5 3 10 10 H 1.48496 * 109.47507 * 335.67521 * 7 5 3 11 11 C 1.46501 * 120.00258 * 179.72498 * 2 1 3 12 12 C 1.52998 * 109.46898 * 89.99942 * 11 2 1 13 13 C 1.53001 * 112.85444 * 48.80417 * 12 11 2 14 14 C 1.53789 * 113.61461 * 277.49528 * 12 11 2 15 15 C 1.53778 * 87.08205 * 220.02284 * 14 12 11 16 16 F 1.39901 * 113.61196 * 270.88479 * 15 14 12 17 17 F 1.39896 * 113.69283 * 139.99621 * 15 14 12 18 18 C 1.53783 * 87.08327 * 25.43320 * 15 14 12 19 19 H 1.09004 * 109.46987 * 266.57311 * 1 2 3 20 20 H 1.08998 * 109.47153 * 26.57597 * 1 2 3 21 21 H 1.09000 * 109.46800 * 146.57893 * 1 2 3 22 22 H 0.96994 * 119.99851 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.46918 * 209.99958 * 11 2 1 24 24 H 1.08998 * 109.46734 * 330.00410 * 11 2 1 25 25 H 1.08994 * 109.46694 * 69.66559 * 13 12 11 26 26 H 1.08992 * 109.47479 * 189.66666 * 13 12 11 27 27 H 1.09003 * 109.46746 * 309.66903 * 13 12 11 28 28 H 1.09004 * 113.61333 * 334.57081 * 14 12 11 29 29 H 1.08998 * 113.60944 * 105.47083 * 14 12 11 30 30 H 1.09003 * 113.61356 * 220.01864 * 18 15 14 31 31 H 1.08999 * 113.61256 * 89.11346 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7846 2.0202 -0.5807 5 6 3.3129 1.3158 0.7463 6 7 4.1993 2.2355 0.4286 7 14 3.6202 0.1854 2.2012 8 1 4.4631 -0.9586 1.7700 9 1 4.3186 0.9381 3.2741 10 1 2.3232 -0.3220 2.7165 11 6 2.1976 -1.2687 0.0061 12 6 2.4525 -1.7172 -1.4343 13 6 3.0325 -0.6043 -2.3094 14 6 1.2587 -2.4466 -2.0729 15 6 2.2826 -3.4043 -2.7047 16 9 2.7522 -2.9790 -3.9521 17 9 1.8749 -4.7425 -2.7052 18 6 3.2195 -3.0461 -1.5390 19 1 -0.3633 -0.0614 1.0259 20 1 -0.3633 0.9191 -0.4597 21 1 -0.3633 -0.8577 -0.5660 22 1 5.0123 2.3260 0.9498 23 1 3.1499 -1.1358 0.5193 24 1 1.6085 -2.0258 0.5235 25 1 4.0541 -0.3904 -1.9955 26 1 3.0320 -0.9238 -3.3514 27 1 2.4246 0.2944 -2.2046 28 1 0.6016 -2.9266 -1.3476 29 1 0.7175 -1.8432 -2.8016 30 1 4.2612 -2.9267 -1.8369 31 1 3.0983 -3.6899 -0.6679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720678796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:28 Heat of formation + Delta-G solvation = -55.596513 kcal Electronic energy + Delta-G solvation = -15967.080340 eV Core-core repulsion = 13113.949766 eV Total energy + Delta-G solvation = -2853.130574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.57088 -46.90220 -38.70719 -35.09745 -31.56976 -28.79259 -26.67001 -26.09066 -25.79736 -22.31287 -20.87599 -18.46261 -17.48128 -16.57889 -16.23932 -15.90381 -15.16705 -14.28106 -13.81766 -13.71127 -13.42153 -13.25535 -13.07194 -12.71086 -12.64721 -12.05533 -11.76070 -11.66685 -11.26935 -10.88860 -10.60663 -10.53427 -10.37590 -10.20198 -9.92342 -9.75160 -9.51272 -8.51613 -6.82402 -6.02422 -3.42839 3.26996 3.44232 3.49007 3.78961 4.10654 4.49261 4.59171 4.69026 4.76630 5.21728 5.35687 5.67682 5.73263 5.81829 5.85384 5.97859 6.02011 6.25204 6.26610 6.42987 6.60061 6.68936 6.69609 6.76666 6.85646 7.38488 8.03007 8.34825 8.95692 9.68505 10.09865 11.13065 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037831 B = 0.010181 C = 0.009988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.954322 B = 2749.593574 C = 2802.712166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.608 5.608 3 C -0.265 4.265 4 H 0.079 0.921 5 C 0.038 3.962 6 N -0.897 5.897 7 Si 0.872 3.128 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.156 3.844 12 C -0.084 4.084 13 C -0.121 4.121 14 C -0.150 4.150 15 C 0.249 3.751 16 F -0.181 7.181 17 F -0.202 7.202 18 C -0.164 4.164 19 H 0.005 0.995 20 H 0.044 0.956 21 H 0.027 0.973 22 H 0.263 0.737 23 H 0.059 0.941 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 -10.083 -3.611 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.331 5.331 3 C -0.394 4.394 4 H 0.096 0.904 5 C -0.162 4.162 6 N -0.538 5.538 7 Si 0.702 3.298 8 H -0.214 1.214 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.029 3.971 12 C -0.087 4.087 13 C -0.177 4.177 14 C -0.188 4.188 15 C 0.213 3.787 16 F -0.162 7.162 17 F -0.183 7.183 18 C -0.202 4.202 19 H 0.024 0.976 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.831 -9.983 -3.599 11.282 hybrid contribution 0.375 -0.811 0.701 1.136 sum -3.456 -10.794 -2.898 11.698 Atomic orbital electron populations 1.21105 0.84640 0.99044 0.97374 1.43994 1.00682 1.01840 1.86619 1.18704 1.06258 0.90763 1.23637 0.90371 1.25449 0.96926 0.96304 0.97562 1.69871 1.08628 1.35966 1.39299 0.87007 0.77953 0.80151 0.84648 1.21359 1.22926 1.19515 1.21062 0.96584 0.88010 0.91422 1.22343 0.92936 0.92922 1.00473 1.21561 1.01936 0.98404 0.95847 1.24165 0.97707 0.96506 1.00442 1.22337 0.98029 0.76886 0.81448 1.92965 1.89480 1.89173 1.44567 1.92959 1.91374 1.37163 1.96764 1.24252 1.00224 0.99323 0.96439 0.97648 0.93688 0.95404 0.92737 0.92328 0.94006 0.92409 0.94103 0.89067 0.87921 0.89332 0.89287 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.35 10.70 59.85 0.64 2.99 16 2 N -0.61 -13.63 2.04 -181.12 -0.37 -14.00 16 3 C -0.27 -6.99 7.77 -15.06 -0.12 -7.11 16 4 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 5 C 0.04 1.06 5.29 -17.43 -0.09 0.97 16 6 N -0.90 -26.33 13.97 55.49 0.78 -25.55 16 7 Si 0.87 21.53 25.09 -169.99 -4.26 17.27 16 8 H -0.29 -6.81 6.68 56.52 0.38 -6.43 16 9 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 C 0.16 3.16 4.08 -4.04 -0.02 3.14 16 12 C -0.08 -1.49 1.17 -153.69 -0.18 -1.67 16 13 C -0.12 -2.36 8.45 37.16 0.31 -2.05 16 14 C -0.15 -2.29 6.24 -25.92 -0.16 -2.45 16 15 C 0.25 3.87 3.26 -25.92 -0.08 3.78 16 16 F -0.18 -3.01 15.52 2.25 0.03 -2.98 16 17 F -0.20 -3.14 17.41 2.25 0.04 -3.10 16 18 C -0.16 -2.53 7.02 -25.91 -0.18 -2.71 16 19 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 20 H 0.04 0.84 8.01 -51.93 -0.42 0.43 16 21 H 0.03 0.45 7.32 -51.93 -0.38 0.07 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 23 H 0.06 1.33 3.39 -51.93 -0.18 1.15 16 24 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.04 0.73 6.20 -51.93 -0.32 0.40 16 27 H 0.09 2.02 6.07 -51.93 -0.32 1.70 16 28 H 0.10 1.41 7.96 -51.93 -0.41 1.00 16 29 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 30 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 31 H 0.10 1.44 8.10 -51.93 -0.42 1.02 16 LS Contribution 252.69 15.07 3.81 3.81 Total: -1.00 -28.25 252.69 -3.98 -32.23 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -4.12 Total: -2.57 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 0.12 Total: -5.11 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.41 Total: -39.55 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.07 Total: -6.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.26 Total: 17.27 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.25 -3.98 -32.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720678796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.366 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds