Wall clock time and date at job start Mon Mar 30 2020 03:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99725 * 2 1 4 4 H 1.08001 * 119.99941 * 321.62175 * 3 2 1 5 5 C 1.38814 * 119.99992 * 141.62851 * 3 2 1 6 6 N 1.31622 * 120.00053 * 157.28419 * 5 3 2 7 7 Si 1.86796 * 119.99785 * 337.28576 * 5 3 2 8 8 H 1.48499 * 109.47495 * 95.68019 * 7 5 3 9 9 H 1.48509 * 109.47020 * 215.67826 * 7 5 3 10 10 H 1.48496 * 109.47507 * 335.67521 * 7 5 3 11 11 C 1.46501 * 120.00258 * 179.72498 * 2 1 3 12 12 C 1.52998 * 109.46898 * 89.99942 * 11 2 1 13 13 C 1.53001 * 112.85444 * 48.80417 * 12 11 2 14 14 C 1.53789 * 113.61461 * 277.49528 * 12 11 2 15 15 C 1.53778 * 87.08205 * 220.02284 * 14 12 11 16 16 F 1.39901 * 113.61196 * 270.88479 * 15 14 12 17 17 F 1.39896 * 113.69283 * 139.99621 * 15 14 12 18 18 C 1.53783 * 87.08327 * 25.43320 * 15 14 12 19 19 H 1.09004 * 109.46987 * 266.57311 * 1 2 3 20 20 H 1.08998 * 109.47153 * 26.57597 * 1 2 3 21 21 H 1.09000 * 109.46800 * 146.57893 * 1 2 3 22 22 H 0.96994 * 119.99851 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.46918 * 209.99958 * 11 2 1 24 24 H 1.08998 * 109.46734 * 330.00410 * 11 2 1 25 25 H 1.08994 * 109.46694 * 69.66559 * 13 12 11 26 26 H 1.08992 * 109.47479 * 189.66666 * 13 12 11 27 27 H 1.09003 * 109.46746 * 309.66903 * 13 12 11 28 28 H 1.09004 * 113.61333 * 334.57081 * 14 12 11 29 29 H 1.08998 * 113.60944 * 105.47083 * 14 12 11 30 30 H 1.09003 * 113.61356 * 220.01864 * 18 15 14 31 31 H 1.08999 * 113.61256 * 89.11346 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7846 2.0202 -0.5807 5 6 3.3129 1.3158 0.7463 6 7 4.1993 2.2355 0.4286 7 14 3.6202 0.1854 2.2012 8 1 4.4631 -0.9586 1.7700 9 1 4.3186 0.9381 3.2741 10 1 2.3232 -0.3220 2.7165 11 6 2.1976 -1.2687 0.0061 12 6 2.4525 -1.7172 -1.4343 13 6 3.0325 -0.6043 -2.3094 14 6 1.2587 -2.4466 -2.0729 15 6 2.2826 -3.4043 -2.7047 16 9 2.7522 -2.9790 -3.9521 17 9 1.8749 -4.7425 -2.7052 18 6 3.2195 -3.0461 -1.5390 19 1 -0.3633 -0.0614 1.0259 20 1 -0.3633 0.9191 -0.4597 21 1 -0.3633 -0.8577 -0.5660 22 1 5.0123 2.3260 0.9498 23 1 3.1499 -1.1358 0.5193 24 1 1.6085 -2.0258 0.5235 25 1 4.0541 -0.3904 -1.9955 26 1 3.0320 -0.9238 -3.3514 27 1 2.4246 0.2944 -2.2046 28 1 0.6016 -2.9266 -1.3476 29 1 0.7175 -1.8432 -2.8016 30 1 4.2612 -2.9267 -1.8369 31 1 3.0983 -3.6899 -0.6679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720678796.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:28 Heat of formation + Delta-G solvation = -72.041160 kcal Electronic energy + Delta-G solvation = -15967.793433 eV Core-core repulsion = 13113.949766 eV Total energy + Delta-G solvation = -2853.843667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.113 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.80359 -48.13193 -40.12169 -36.80411 -33.59773 -30.27063 -28.25021 -27.86424 -27.11898 -23.84527 -22.51925 -19.90236 -18.99225 -18.13387 -17.58057 -17.30191 -16.90460 -15.88315 -15.30904 -15.07487 -14.91829 -14.82816 -14.50092 -14.30003 -14.12457 -13.65133 -13.26331 -13.18614 -12.89591 -12.60318 -12.26940 -12.24896 -11.86761 -11.71448 -11.57718 -11.34853 -11.12041 -10.55144 -8.67235 -8.13854 -5.49967 1.32013 1.44418 1.53929 2.46198 2.57119 2.87104 3.07847 3.32104 3.45166 3.48416 3.72078 4.29410 4.38227 4.54477 4.57769 4.67588 4.76828 4.79447 4.83850 4.89486 5.09128 5.19284 5.23262 5.24229 5.26989 5.70767 6.00794 6.23111 7.05690 7.69854 8.11839 9.05883 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.037831 B = 0.010181 C = 0.009988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.954322 B = 2749.593574 C = 2802.712166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.620 5.620 3 C -0.243 4.243 4 H 0.040 0.960 5 C -0.016 4.016 6 N -0.946 5.946 7 Si 0.932 3.068 8 H -0.272 1.272 9 H -0.315 1.315 10 H -0.259 1.259 11 C 0.150 3.850 12 C -0.093 4.093 13 C -0.110 4.110 14 C -0.138 4.138 15 C 0.252 3.748 16 F -0.190 7.190 17 F -0.198 7.198 18 C -0.157 4.157 19 H 0.013 0.987 20 H 0.037 0.963 21 H 0.062 0.938 22 H 0.260 0.740 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 -12.732 -3.202 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.344 5.344 3 C -0.373 4.373 4 H 0.058 0.942 5 C -0.213 4.213 6 N -0.591 5.591 7 Si 0.761 3.239 8 H -0.199 1.199 9 H -0.244 1.244 10 H -0.183 1.183 11 C 0.025 3.975 12 C -0.096 4.096 13 C -0.167 4.167 14 C -0.176 4.176 15 C 0.215 3.785 16 F -0.171 7.171 17 F -0.179 7.179 18 C -0.195 4.195 19 H 0.031 0.969 20 H 0.056 0.944 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.147 0.853 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.094 -12.675 -3.197 14.029 hybrid contribution 0.688 0.032 0.476 0.837 sum -4.406 -12.644 -2.721 13.663 Atomic orbital electron populations 1.21214 0.82375 1.00369 0.98302 1.44115 1.02161 1.01311 1.86770 1.18518 1.05788 0.91393 1.21595 0.94221 1.25985 0.97101 0.98208 0.99990 1.70001 1.09483 1.38857 1.40742 0.86025 0.78233 0.78620 0.80974 1.19904 1.24366 1.18322 1.21166 0.95752 0.87603 0.92971 1.22151 0.95459 0.93308 0.98670 1.21379 0.99820 0.98193 0.97309 1.24142 0.96970 0.95799 1.00644 1.22271 0.98115 0.77039 0.81034 1.92952 1.89627 1.89293 1.45247 1.92969 1.91318 1.36908 1.96722 1.24265 1.00053 0.97804 0.97400 0.96903 0.94369 0.91910 0.93116 0.94695 0.90751 0.95030 0.92658 0.92219 0.85345 0.89093 0.89298 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.28 10.70 127.77 1.37 5.65 16 2 N -0.62 -26.75 2.04 -726.94 -1.48 -28.23 16 3 C -0.24 -12.98 7.77 84.03 0.65 -12.33 16 4 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 5 C -0.02 -0.92 5.29 84.86 0.45 -0.47 16 6 N -0.95 -57.51 13.97 21.65 0.30 -57.20 16 7 Si 0.93 44.38 25.09 68.60 1.72 46.10 16 8 H -0.27 -12.21 6.68 99.48 0.66 -11.54 16 9 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 C 0.15 5.66 4.08 86.38 0.35 6.01 16 12 C -0.09 -3.07 1.17 -51.65 -0.06 -3.13 16 13 C -0.11 -4.28 8.45 71.98 0.61 -3.67 16 14 C -0.14 -3.64 6.24 31.12 0.19 -3.44 16 15 C 0.25 6.91 3.26 31.12 0.10 7.01 16 16 F -0.19 -5.86 15.52 44.97 0.70 -5.16 16 17 F -0.20 -5.38 17.41 44.97 0.78 -4.60 16 18 C -0.16 -4.30 7.02 31.12 0.22 -4.08 16 19 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 20 H 0.04 1.37 8.01 -2.39 -0.02 1.35 16 21 H 0.06 1.77 7.32 -2.39 -0.02 1.75 16 22 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.04 1.49 3.39 -2.39 -0.01 1.49 16 24 H 0.07 2.33 7.87 -2.39 -0.02 2.31 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.94 6.20 -2.39 -0.01 1.93 16 27 H 0.06 2.68 6.07 -2.39 -0.01 2.67 16 28 H 0.13 2.78 7.96 -2.39 -0.02 2.76 16 29 H 0.09 2.40 8.10 -2.39 -0.02 2.38 16 30 H 0.09 2.46 8.10 -2.39 -0.02 2.44 16 31 H 0.13 2.93 8.10 -2.39 -0.02 2.91 16 Total: -1.00 -61.44 252.69 6.98 -54.47 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 1.08 Total: 3.08 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 3.88 Total: -8.45 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -1.18 Total: -85.44 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 1.48 Total: -9.76 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.72 Total: 46.10 kcal Total: -61.44 6.98 -54.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720678796.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.576 kcal (2) G-P(sol) polarization free energy of solvation -61.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds