Wall clock time and date at job start Mon Mar 30 2020 02:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47120 * 272.02108 * 3 2 1 5 5 H 1.48503 * 109.47126 * 32.02736 * 3 2 1 6 6 H 1.48498 * 109.46953 * 152.02355 * 3 2 1 7 7 C 1.38814 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99922 * 336.90449 * 7 2 1 9 9 N 1.36936 * 119.99570 * 156.90278 * 7 2 1 10 10 C 1.46494 * 120.00544 * 320.85063 * 9 7 2 11 11 C 1.50702 * 109.47297 * 270.00215 * 10 9 7 12 12 C 1.38599 * 120.79751 * 269.72311 * 11 10 9 13 13 N 1.32332 * 119.10111 * 179.72005 * 12 11 10 14 14 C 1.31792 * 120.81869 * 0.55929 * 13 12 11 15 15 N 1.31795 * 121.75739 * 359.70716 * 14 13 12 16 16 C 1.32336 * 120.81621 * 0.02562 * 15 14 13 17 17 C 1.46504 * 119.99345 * 140.84749 * 9 7 2 18 18 C 1.53000 * 117.50149 * 4.02721 * 17 9 7 19 19 C 1.52995 * 117.50369 * 295.40182 * 17 9 7 20 20 H 0.97007 * 119.99580 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46705 * 29.99945 * 10 9 7 22 22 H 1.08998 * 109.47441 * 149.99703 * 10 9 7 23 23 H 1.08003 * 120.44633 * 359.97438 * 12 11 10 24 24 H 1.08000 * 119.12362 * 179.73498 * 14 13 12 25 25 H 1.08001 * 120.44587 * 179.97438 * 16 15 14 26 26 H 1.09004 * 115.54339 * 149.72955 * 17 9 7 27 27 H 1.08997 * 117.49933 * 359.97438 * 18 17 9 28 28 H 1.08998 * 117.49929 * 145.01562 * 18 17 9 29 29 H 1.08995 * 117.50052 * 214.98533 * 19 17 9 30 30 H 1.09003 * 117.49653 * 359.97307 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4550 2.0711 -1.3992 5 1 1.4698 2.6399 0.7425 6 1 3.5685 1.4282 0.6568 7 6 2.0103 -1.2022 0.0005 8 1 1.5352 -2.0998 0.3678 9 7 3.2973 -1.2499 -0.4647 10 6 3.6796 -0.4688 -1.6436 11 6 3.4674 -1.2965 -2.8850 12 6 4.4821 -2.0963 -3.3866 13 7 4.2574 -2.8136 -4.4758 14 6 3.0911 -2.7651 -5.0874 15 7 2.1052 -2.0120 -4.6425 16 6 2.2549 -1.2715 -3.5560 17 6 4.2920 -2.0821 0.2168 18 6 3.8101 -2.9463 1.3837 19 6 4.6642 -1.7057 1.6522 20 1 -0.4850 0.8401 -0.0004 21 1 3.0666 0.4310 -1.6976 22 1 4.7303 -0.1887 -1.5688 23 1 5.4418 -2.1368 -2.8929 24 1 2.9389 -3.3586 -5.9768 25 1 1.4432 -0.6563 -3.1968 26 1 5.0803 -2.4870 -0.4179 27 1 2.7531 -2.8954 1.6447 28 1 4.2812 -3.9202 1.5169 29 1 5.6972 -1.8632 1.9621 30 1 4.1693 -0.8385 2.0895 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769095427.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:53 Heat of formation + Delta-G solvation = 84.556644 kcal Electronic energy + Delta-G solvation = -14722.509394 eV Core-core repulsion = 12326.145504 eV Total energy + Delta-G solvation = -2396.363890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.83805 -38.94218 -35.75292 -34.56199 -34.10055 -32.09100 -27.88679 -26.01833 -25.32173 -23.69757 -22.94866 -21.44552 -18.70500 -18.42503 -18.34781 -17.14575 -17.09486 -15.74695 -15.50067 -15.43368 -14.55785 -14.48017 -14.40272 -14.18443 -13.78625 -13.06784 -12.66744 -12.19590 -12.09799 -11.91099 -11.74788 -11.69624 -11.31538 -11.00676 -10.64607 -10.30043 -10.12020 -8.68361 -8.23101 -5.63339 0.03917 0.17429 1.28757 1.42977 1.52710 2.38409 2.78817 3.05260 3.27895 3.31625 3.35135 3.37005 3.82235 3.96401 4.04296 4.28675 4.38004 4.47345 4.62544 4.67749 4.80835 4.95084 5.02030 5.12876 5.31622 5.54139 5.54693 5.91039 6.05180 6.19805 6.94487 7.16755 7.57385 7.97729 8.95412 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.012737 C = 0.009935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.417382 B = 2197.849369 C = 2817.736606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.929 3.071 4 H -0.265 1.265 5 H -0.312 1.312 6 H -0.253 1.253 7 C -0.255 4.255 8 H 0.039 0.961 9 N -0.576 5.576 10 C 0.175 3.825 11 C -0.189 4.189 12 C 0.154 3.846 13 N -0.530 5.530 14 C 0.269 3.731 15 N -0.542 5.542 16 C 0.147 3.853 17 C 0.105 3.895 18 C -0.194 4.194 19 C -0.205 4.205 20 H 0.264 0.736 21 H 0.050 0.950 22 H 0.096 0.904 23 H 0.195 0.805 24 H 0.222 0.778 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.859 -2.089 -4.772 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.206 4.206 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.240 1.240 6 H -0.176 1.176 7 C -0.384 4.384 8 H 0.056 0.944 9 N -0.295 5.295 10 C 0.049 3.951 11 C -0.195 4.195 12 C -0.012 4.012 13 N -0.244 5.244 14 C -0.018 4.018 15 N -0.256 5.256 16 C -0.019 4.019 17 C -0.002 4.002 18 C -0.232 4.232 19 C -0.245 4.245 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.115 0.885 23 H 0.212 0.788 24 H 0.239 0.761 25 H 0.160 0.840 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.551 -2.539 -5.581 13.078 hybrid contribution -0.638 1.362 1.136 1.885 sum 10.913 -1.177 -4.445 11.842 Atomic orbital electron populations 1.70009 1.07794 1.27620 1.52772 1.26039 0.95440 1.00867 0.98234 0.86126 0.79749 0.80338 0.78143 1.19128 1.24049 1.17633 1.18438 0.88108 0.92936 1.38952 0.94368 1.43736 1.06625 1.52973 1.26141 1.20248 1.00685 0.92059 0.82107 1.22569 0.96004 1.02117 0.98857 1.23491 0.99362 0.88128 0.90259 1.68441 1.24200 1.21819 1.09903 1.25467 0.83958 0.93501 0.98916 1.68393 1.34494 1.08369 1.14366 1.23029 0.96256 0.93400 0.89175 1.21536 0.94143 0.97051 0.87459 1.23042 0.99543 0.95525 1.05064 1.23343 0.99994 0.97987 1.03213 0.92670 0.93190 0.88540 0.78789 0.76138 0.83976 0.85275 0.91682 0.87264 0.86792 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.97 21.65 0.30 -55.90 16 2 C -0.01 -0.44 5.28 84.86 0.45 0.01 16 3 Si 0.93 42.75 25.31 68.60 1.74 44.49 16 4 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 5 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.25 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.25 -13.47 8.93 84.03 0.75 -12.72 16 8 H 0.04 2.33 6.86 -2.91 -0.02 2.31 16 9 N -0.58 -24.44 2.36 -682.34 -1.61 -26.06 16 10 C 0.17 6.46 4.74 85.63 0.41 6.87 16 11 C -0.19 -6.64 5.50 -19.69 -0.11 -6.75 16 12 C 0.15 4.52 11.01 84.70 0.93 5.45 16 13 N -0.53 -15.97 10.44 -200.05 -2.09 -18.06 16 14 C 0.27 8.16 12.29 180.88 2.22 10.38 16 15 N -0.54 -19.82 10.44 -200.05 -2.09 -21.91 16 16 C 0.15 5.78 11.01 84.70 0.93 6.71 16 17 C 0.10 3.66 6.57 44.99 0.30 3.95 16 18 C -0.19 -6.82 9.80 30.59 0.30 -6.52 16 19 C -0.21 -6.79 10.34 30.59 0.32 -6.48 16 20 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 21 H 0.05 2.07 3.41 -2.38 -0.01 2.06 16 22 H 0.10 2.84 8.03 -2.39 -0.02 2.82 16 23 H 0.20 4.16 8.06 -2.91 -0.02 4.13 16 24 H 0.22 4.81 8.06 -2.91 -0.02 4.79 16 25 H 0.14 6.20 8.06 -2.91 -0.02 6.17 16 26 H 0.13 3.54 8.14 -2.38 -0.02 3.52 16 27 H 0.06 2.81 6.44 -2.39 -0.02 2.79 16 28 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -64.34 258.51 3.83 -60.51 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.08 Total: 16.02 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 6.49 Total: 0.90 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -5.48 Total: -121.93 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.74 Total: 44.49 kcal Total: -64.34 3.83 -60.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769095427.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.070 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds