Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47419 * 296.73231 * 3 2 1 5 5 C 1.36939 * 119.99836 * 96.02781 * 4 3 2 6 6 H 1.07997 * 119.99854 * 165.19846 * 5 4 3 7 7 C 1.38812 * 119.99976 * 345.19896 * 5 4 3 8 8 N 1.31624 * 120.00192 * 338.71794 * 7 5 4 9 9 Si 1.86802 * 119.99949 * 158.71862 * 7 5 4 10 10 H 1.48498 * 109.47124 * 84.99258 * 9 7 5 11 11 H 1.48499 * 109.46886 * 204.98837 * 9 7 5 12 12 H 1.48497 * 109.47286 * 324.98661 * 9 7 5 13 13 C 1.46498 * 119.99989 * 275.76063 * 4 3 2 14 14 C 1.53003 * 109.46677 * 270.27037 * 13 4 3 15 15 C 1.50697 * 109.46746 * 180.02562 * 14 13 4 16 16 C 1.39872 * 126.04029 * 269.68611 * 15 14 13 17 17 N 1.30841 * 108.20043 * 179.81914 * 16 15 14 18 18 N 1.40077 * 108.20734 * 0.44698 * 17 16 15 19 19 H 0.97005 * 126.03988 * 179.70097 * 18 17 16 20 20 C 1.34952 * 107.92551 * 359.71131 * 18 17 16 21 21 H 4.40644 * 5.51387 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.46706 * 176.73419 * 3 2 1 23 23 H 1.08998 * 109.47231 * 56.73917 * 3 2 1 24 24 H 0.96995 * 119.99805 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.47320 * 30.26916 * 13 4 3 26 26 H 1.09004 * 109.47004 * 150.27483 * 13 4 3 27 27 H 1.08999 * 109.47147 * 299.99985 * 14 13 4 28 28 H 1.08999 * 109.46971 * 59.99992 * 14 13 4 29 29 H 1.08001 * 125.89811 * 0.02562 * 16 15 14 30 30 H 1.07999 * 126.12503 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6204 1.2336 5 6 3.4809 -1.9453 1.2425 6 1 4.0578 -2.3471 2.0623 7 6 3.0905 -2.7717 0.1977 8 7 2.0731 -2.4321 -0.5652 9 14 4.0091 -4.3659 -0.1254 10 1 3.4583 -5.4388 0.7409 11 1 3.8483 -4.7494 -1.5510 12 1 5.4506 -4.1766 0.1767 13 6 3.2585 0.1773 2.4561 14 6 4.6523 0.8056 2.5160 15 6 4.7798 1.6256 3.7738 16 6 4.4697 2.9831 3.9062 17 7 4.7061 3.3376 5.1433 18 7 5.1844 2.2178 5.8357 19 1 5.4442 2.1925 6.7699 20 6 5.2203 1.1803 4.9733 21 1 -1.0499 0.0001 0.0003 22 1 3.0088 1.0269 -0.0585 23 1 3.0096 -0.5628 -0.8593 24 1 1.8002 -3.0098 -1.2950 25 1 2.5048 0.9647 2.4540 26 1 3.1114 -0.4642 3.3250 27 1 5.4060 0.0182 2.5180 28 1 4.7993 1.4470 1.6471 29 1 4.0962 3.6266 3.1234 30 1 5.5425 0.1748 5.2000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617457256.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = 153.166514 kcal Electronic energy + Delta-G solvation = -14086.393724 eV Core-core repulsion = 11693.004981 eV Total energy + Delta-G solvation = -2393.388743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92513 -36.26532 -33.02236 -31.49916 -31.15852 -30.35653 -27.36455 -25.95313 -23.63845 -21.77791 -20.78730 -19.62302 -17.55951 -17.30360 -16.21302 -15.05260 -14.36040 -14.32784 -13.80246 -13.66028 -13.14461 -12.89929 -12.33591 -12.00464 -11.54082 -11.32085 -11.03449 -10.72985 -10.50405 -10.31618 -9.98318 -9.84451 -9.46634 -8.87806 -8.80455 -8.40143 -8.17641 -6.91351 -5.74115 -3.12686 2.07595 3.02838 3.07300 3.39317 3.46921 3.48394 4.22618 4.44032 4.57568 5.03631 5.13032 5.38921 5.59052 5.75359 5.81685 5.89863 6.16777 6.27049 6.37688 6.49681 6.76199 6.83806 6.95181 7.08142 7.36571 7.42216 7.50016 7.78322 7.82402 8.34154 9.16632 9.24362 9.84562 10.30197 11.30269 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.007582 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.620422 B = 3691.880323 C = 4407.870429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.093 4.093 3 C 0.264 3.736 4 N -0.590 5.590 5 C -0.259 4.259 6 H 0.075 0.925 7 C -0.001 4.001 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.157 3.843 14 C -0.063 4.063 15 C -0.215 4.215 16 C 0.053 3.947 17 N -0.307 5.307 18 N -0.486 5.486 19 H 0.434 0.566 20 C 0.049 3.951 21 H 0.190 0.810 22 H 0.035 0.965 23 H 0.102 0.898 24 H 0.254 0.746 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.181 0.819 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 6.886 7.290 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.096 4.096 3 C 0.139 3.861 4 N -0.310 5.310 5 C -0.388 4.388 6 H 0.093 0.907 7 C -0.199 4.199 8 N -0.538 5.538 9 Si 0.728 3.272 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.030 3.970 14 C -0.105 4.105 15 C -0.226 4.226 16 C -0.134 4.134 17 N -0.130 5.130 18 N -0.194 5.194 19 H 0.277 0.723 20 C -0.098 4.098 21 H 0.207 0.793 22 H 0.053 0.947 23 H 0.120 0.880 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.198 0.802 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.282 7.715 7.967 12.284 hybrid contribution 0.151 -1.817 -0.274 1.844 sum 5.434 5.898 7.694 11.113 Atomic orbital electron populations 1.24204 0.95386 1.08211 1.04970 1.24467 0.95440 0.93601 0.96067 1.17905 0.82597 0.94142 0.91457 1.44098 1.74665 1.07354 1.04877 1.19203 1.27825 0.84889 1.06851 0.90730 1.24862 0.97049 0.97960 1.00039 1.70133 1.24133 1.38209 1.21284 0.86375 0.79948 0.83601 0.77244 1.21618 1.21630 1.20645 1.20752 0.93021 0.93804 0.89473 1.20619 1.00900 0.97263 0.91679 1.20425 1.10364 0.94729 0.97123 1.23855 0.99603 0.95595 0.94348 1.77227 1.20493 1.08497 1.06756 1.46226 1.53775 1.07296 1.12124 0.72279 1.22421 1.02460 0.94159 0.90732 0.79324 0.94679 0.88050 0.93594 0.94524 0.93733 0.91420 0.91854 0.80248 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.20 19.25 29.55 0.57 -6.63 16 2 C -0.09 -2.30 11.75 -37.12 -0.44 -2.74 16 3 C 0.26 6.28 5.41 -6.83 -0.04 6.25 16 4 N -0.59 -14.24 2.49 -176.57 -0.44 -14.68 16 5 C -0.26 -6.84 9.68 -15.06 -0.15 -6.98 16 6 H 0.07 1.91 7.92 -52.49 -0.42 1.50 16 7 C 0.00 -0.02 4.90 -17.43 -0.09 -0.11 16 8 N -0.89 -25.42 9.40 55.49 0.52 -24.90 16 9 Si 0.90 21.28 29.60 -169.99 -5.03 16.25 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 C 0.16 3.14 5.66 -4.04 -0.02 3.12 16 14 C -0.06 -1.06 6.02 -27.88 -0.17 -1.22 16 15 C -0.21 -3.17 5.35 -105.05 -0.56 -3.73 16 16 C 0.05 0.76 11.96 -17.36 -0.21 0.55 16 17 N -0.31 -4.48 12.70 30.63 0.39 -4.09 16 18 N -0.49 -5.82 7.36 30.45 0.22 -5.59 16 19 H 0.43 3.61 8.96 -182.61 -1.64 1.98 16 20 C 0.05 0.62 11.90 -17.22 -0.20 0.41 16 21 H 0.19 3.69 7.80 -54.10 -0.42 3.27 16 22 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 23 H 0.10 2.63 6.21 -51.93 -0.32 2.31 16 24 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.04 0.91 8.04 -51.93 -0.42 0.50 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 30 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 270.60 15.07 4.08 4.08 Total: -1.00 -31.40 270.60 -6.44 -37.85 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.88 Total: 2.19 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.30 Total: -11.09 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.69 Total: -49.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.40 -6.44 -37.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617457256.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.012 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds