Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47419 * 296.73231 * 3 2 1 5 5 C 1.36939 * 119.99836 * 96.02781 * 4 3 2 6 6 H 1.07997 * 119.99854 * 165.19846 * 5 4 3 7 7 C 1.38812 * 119.99976 * 345.19896 * 5 4 3 8 8 N 1.31624 * 120.00192 * 338.71794 * 7 5 4 9 9 Si 1.86802 * 119.99949 * 158.71862 * 7 5 4 10 10 H 1.48498 * 109.47124 * 84.99258 * 9 7 5 11 11 H 1.48499 * 109.46886 * 204.98837 * 9 7 5 12 12 H 1.48497 * 109.47286 * 324.98661 * 9 7 5 13 13 C 1.46498 * 119.99989 * 275.76063 * 4 3 2 14 14 C 1.53003 * 109.46677 * 270.27037 * 13 4 3 15 15 C 1.50697 * 109.46746 * 180.02562 * 14 13 4 16 16 C 1.39872 * 126.04029 * 269.68611 * 15 14 13 17 17 N 1.30841 * 108.20043 * 179.81914 * 16 15 14 18 18 N 1.40077 * 108.20734 * 0.44698 * 17 16 15 19 19 H 0.97005 * 126.03988 * 179.70097 * 18 17 16 20 20 C 1.34952 * 107.92551 * 359.71131 * 18 17 16 21 21 H 4.40644 * 5.51387 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.46706 * 176.73419 * 3 2 1 23 23 H 1.08998 * 109.47231 * 56.73917 * 3 2 1 24 24 H 0.96995 * 119.99805 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.47320 * 30.26916 * 13 4 3 26 26 H 1.09004 * 109.47004 * 150.27483 * 13 4 3 27 27 H 1.08999 * 109.47147 * 299.99985 * 14 13 4 28 28 H 1.08999 * 109.46971 * 59.99992 * 14 13 4 29 29 H 1.08001 * 125.89811 * 0.02562 * 16 15 14 30 30 H 1.07999 * 126.12503 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6204 1.2336 5 6 3.4809 -1.9453 1.2425 6 1 4.0578 -2.3471 2.0623 7 6 3.0905 -2.7717 0.1977 8 7 2.0731 -2.4321 -0.5652 9 14 4.0091 -4.3659 -0.1254 10 1 3.4583 -5.4388 0.7409 11 1 3.8483 -4.7494 -1.5510 12 1 5.4506 -4.1766 0.1767 13 6 3.2585 0.1773 2.4561 14 6 4.6523 0.8056 2.5160 15 6 4.7798 1.6256 3.7738 16 6 4.4697 2.9831 3.9062 17 7 4.7061 3.3376 5.1433 18 7 5.1844 2.2178 5.8357 19 1 5.4442 2.1925 6.7699 20 6 5.2203 1.1803 4.9733 21 1 -1.0499 0.0001 0.0003 22 1 3.0088 1.0269 -0.0585 23 1 3.0096 -0.5628 -0.8593 24 1 1.8002 -3.0098 -1.2950 25 1 2.5048 0.9647 2.4540 26 1 3.1114 -0.4642 3.3250 27 1 5.4060 0.0182 2.5180 28 1 4.7993 1.4470 1.6471 29 1 4.0962 3.6266 3.1234 30 1 5.5425 0.1748 5.2000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617457256.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = 134.099745 kcal Electronic energy + Delta-G solvation = -14087.220521 eV Core-core repulsion = 11693.004981 eV Total energy + Delta-G solvation = -2394.215540 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.97666 -38.05258 -34.53419 -33.41820 -32.40304 -31.83892 -28.80458 -27.86228 -25.26483 -22.86998 -22.43836 -20.75548 -19.32386 -18.49174 -18.06193 -16.91484 -15.65650 -15.62270 -15.32567 -15.21963 -14.85008 -14.29634 -13.76565 -13.39186 -13.13596 -13.10859 -12.79413 -12.56744 -12.23993 -11.87153 -11.77054 -11.32811 -10.75961 -10.69665 -10.49774 -10.25732 -9.42692 -8.77834 -7.76747 -5.15959 1.05117 1.51291 1.54608 1.62712 1.91698 2.16243 2.37245 2.55998 2.64040 3.35402 3.83950 4.05808 4.15989 4.18437 4.44283 4.72612 4.80686 4.88248 5.00332 5.02255 5.08481 5.39884 5.53585 5.60186 5.67474 5.74847 5.82746 6.36067 6.53262 6.80410 7.17849 7.37293 7.92150 8.34291 9.25676 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.007582 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.620422 B = 3691.880323 C = 4407.870429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.131 4.131 3 C 0.266 3.734 4 N -0.604 5.604 5 C -0.261 4.261 6 H 0.079 0.921 7 C -0.053 4.053 8 N -0.921 5.921 9 Si 0.960 3.040 10 H -0.291 1.291 11 H -0.298 1.298 12 H -0.270 1.270 13 C 0.159 3.841 14 C -0.042 4.042 15 C -0.243 4.243 16 C 0.046 3.954 17 N -0.331 5.331 18 N -0.473 5.473 19 H 0.451 0.549 20 C 0.065 3.935 21 H 0.221 0.779 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.245 0.755 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.194 0.806 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 7.019 8.466 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.134 4.134 3 C 0.141 3.859 4 N -0.324 5.324 5 C -0.391 4.391 6 H 0.097 0.903 7 C -0.248 4.248 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.218 1.218 11 H -0.225 1.225 12 H -0.195 1.195 13 C 0.034 3.966 14 C -0.083 4.083 15 C -0.255 4.255 16 C -0.139 4.139 17 N -0.154 5.154 18 N -0.183 5.183 19 H 0.297 0.703 20 C -0.083 4.083 21 H 0.238 0.762 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.210 0.790 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 6.031 7.883 9.198 13.532 hybrid contribution -0.094 -1.817 -0.543 1.898 sum 5.937 6.067 8.655 12.123 Atomic orbital electron populations 1.25042 0.96459 1.07017 1.03664 1.24924 0.96392 0.94769 0.97327 1.17842 0.82489 0.95051 0.90550 1.44315 1.74811 1.07133 1.06173 1.19537 1.26925 0.85969 1.06668 0.90272 1.25535 0.97905 1.00970 1.00376 1.70303 1.25597 1.39141 1.21715 0.85403 0.79248 0.80140 0.76273 1.21845 1.22465 1.19493 1.20856 0.95085 0.93140 0.87561 1.20229 0.98079 0.97024 0.92943 1.20304 1.12995 0.94992 0.97195 1.24124 0.99343 0.95754 0.94719 1.77194 1.21496 1.09709 1.07028 1.46266 1.52603 1.06522 1.12881 0.70316 1.22824 1.00327 0.95151 0.89998 0.76207 0.91925 0.90718 0.94549 0.94725 0.94501 0.92005 0.91869 0.78956 0.78144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.86 19.25 74.32 1.43 -12.42 16 2 C -0.13 -6.49 11.75 31.13 0.37 -6.13 16 3 C 0.27 12.69 5.41 84.58 0.46 13.15 16 4 N -0.60 -28.96 2.49 -712.54 -1.78 -30.74 16 5 C -0.26 -13.72 9.68 84.03 0.81 -12.90 16 6 H 0.08 3.99 7.92 -2.91 -0.02 3.96 16 7 C -0.05 -2.86 4.90 84.86 0.42 -2.44 16 8 N -0.92 -53.06 9.40 21.65 0.20 -52.85 16 9 Si 0.96 43.92 29.60 68.60 2.03 45.95 16 10 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.16 6.25 5.66 86.38 0.49 6.74 16 14 C -0.04 -1.34 6.02 29.85 0.18 -1.16 16 15 C -0.24 -6.72 5.35 -20.14 -0.11 -6.83 16 16 C 0.05 1.26 11.96 85.24 1.02 2.28 16 17 N -0.33 -9.04 12.70 -57.02 -0.72 -9.76 16 18 N -0.47 -10.09 7.36 -57.59 -0.42 -10.51 16 19 H 0.45 6.23 8.96 -213.33 -1.91 4.31 16 20 C 0.07 1.47 11.90 83.54 0.99 2.46 16 21 H 0.22 8.17 7.80 -4.42 -0.03 8.13 16 22 H 0.06 2.56 8.11 -2.39 -0.02 2.54 16 23 H 0.07 3.96 6.21 -2.39 -0.01 3.94 16 24 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 25 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 26 H 0.04 1.48 8.04 -2.38 -0.02 1.46 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.20 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -65.98 270.60 4.59 -61.39 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -0.78 Total: 13.77 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 6.06 Total: -17.24 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -2.72 Total: -103.87 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.98 4.59 -61.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617457256.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.487 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds