Wall clock time and date at job start Mon Mar 30 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48505 * 109.47060 * 269.99661 * 3 2 1 5 5 H 1.48490 * 109.47146 * 29.99949 * 3 2 1 6 6 H 1.48504 * 109.47142 * 150.00068 * 3 2 1 7 7 C 1.38817 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00529 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99583 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65329 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.83455 * 155.83780 * 10 9 7 12 12 C 1.55155 * 101.58222 * 37.00709 * 11 10 9 13 13 H 1.09004 * 110.71584 * 83.03693 * 12 11 10 14 14 C 1.50700 * 110.72276 * 206.13541 * 12 11 10 15 15 N 1.31795 * 119.12283 * 59.98322 * 14 12 11 16 16 C 1.32326 * 120.81968 * 180.02562 * 15 14 12 17 17 C 1.38605 * 119.10381 * 359.97438 * 16 15 14 18 18 C 1.38592 * 118.39963 * 359.97438 * 17 16 15 19 19 N 1.31793 * 119.12072 * 240.00391 * 14 12 11 20 20 C 1.47029 * 125.64437 * 179.97438 * 9 7 2 21 21 H 0.97003 * 119.99835 * 359.97438 * 1 2 3 22 22 H 1.09003 * 110.35928 * 36.99925 * 10 9 7 23 23 H 1.08999 * 110.36567 * 274.67843 * 10 9 7 24 24 H 1.09009 * 111.00050 * 278.93690 * 11 10 9 25 25 H 1.08991 * 111.03987 * 155.10169 * 11 10 9 26 26 H 1.07997 * 120.45199 * 180.27078 * 16 15 14 27 27 H 1.08001 * 120.79487 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.45142 * 180.02562 * 18 17 16 29 29 H 1.08995 * 109.87998 * 61.67995 * 20 9 7 30 30 H 1.08992 * 109.88151 * 300.50711 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 -0.0005 11 6 -0.4013 -3.9321 -0.6131 12 6 0.7783 -4.7524 -0.0275 13 1 0.5438 -5.1010 0.9783 14 6 1.1184 -5.9133 -0.9262 15 7 1.4902 -5.6757 -2.1681 16 6 1.7960 -6.6697 -2.9863 17 6 1.7215 -7.9731 -2.5209 18 6 1.3277 -8.1831 -1.2088 19 7 1.0359 -7.1392 -0.4494 20 6 1.9317 -3.7275 0.0005 21 1 -0.4850 0.8401 0.0004 22 1 -0.5988 -1.7586 -0.6162 23 1 -0.5281 -2.4871 1.0176 24 1 -0.3509 -3.8975 -1.7014 25 1 -1.3589 -4.3330 -0.2810 26 1 2.1041 -6.4679 -4.0015 27 1 1.9645 -8.8051 -3.1652 28 1 1.2587 -9.1851 -0.8116 29 1 2.5275 -3.8647 0.9029 30 1 2.5586 -3.8507 -0.8825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655713588.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:41 Heat of formation + Delta-G solvation = 78.669091 kcal Electronic energy + Delta-G solvation = -14410.856934 eV Core-core repulsion = 12014.237740 eV Total energy + Delta-G solvation = -2396.619194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91508 -37.24801 -33.55999 -33.20175 -31.48877 -29.20490 -27.64509 -24.87836 -24.41531 -23.12505 -20.10996 -19.90021 -17.40226 -17.02275 -16.50212 -15.29594 -14.75664 -14.55531 -14.34326 -13.73902 -13.43626 -12.66808 -12.23232 -11.83538 -11.51763 -10.98583 -10.83923 -10.75416 -10.71227 -10.67018 -10.07966 -10.02258 -9.77335 -9.49366 -9.20828 -9.02577 -8.57573 -6.74678 -5.58068 -2.98915 1.00076 1.21140 3.45427 3.49822 3.52125 3.88951 4.07876 4.31420 4.57020 4.63774 5.01928 5.15537 5.41259 5.51892 5.55436 5.63453 5.80646 5.96438 6.02967 6.42969 6.49193 6.61878 6.67882 6.77203 7.01749 7.15857 7.59389 7.70157 7.92281 8.30861 8.43453 9.29502 9.90116 10.55642 11.46296 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.059722 B = 0.006736 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.730007 B = 4155.896091 C = 4322.586101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.154 3.846 11 C -0.129 4.129 12 C -0.042 4.042 13 H 0.096 0.904 14 C 0.346 3.654 15 N -0.502 5.502 16 C 0.148 3.852 17 C -0.248 4.248 18 C 0.144 3.856 19 N -0.523 5.523 20 C 0.152 3.848 21 H 0.251 0.749 22 H 0.109 0.891 23 H 0.014 0.986 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.165 0.835 27 H 0.142 0.858 28 H 0.164 0.836 29 H 0.022 0.978 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -14.798 -4.378 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.029 3.971 11 C -0.168 4.168 12 C -0.062 4.062 13 H 0.114 0.886 14 C 0.079 3.921 15 N -0.216 5.216 16 C -0.019 4.019 17 C -0.270 4.270 18 C -0.022 4.022 19 N -0.236 5.236 20 C 0.025 3.975 21 H 0.062 0.938 22 H 0.127 0.873 23 H 0.032 0.968 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.182 0.818 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.040 0.960 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.166 -13.803 -3.767 14.355 hybrid contribution 0.738 -0.175 -0.618 0.978 sum 1.904 -13.978 -4.385 14.772 Atomic orbital electron populations 1.69790 1.04872 1.24670 1.57954 1.24774 0.95732 0.97645 1.02654 0.86058 0.78486 0.83352 0.77533 1.21644 1.21693 1.20784 1.19082 0.90513 0.82378 1.42617 0.90505 1.44451 1.01937 0.99541 1.86849 1.21943 0.84740 0.92160 0.98213 1.23107 0.94652 0.98225 1.00850 1.21141 0.98966 0.89745 0.96385 0.88580 1.23289 0.88227 0.91499 0.89058 1.68324 1.11844 1.36491 1.04892 1.23292 0.90778 0.88333 0.99468 1.22830 1.05706 0.99691 0.98765 1.23192 0.90342 0.98365 0.90329 1.68336 1.16584 0.99900 1.38818 1.21224 0.92775 0.85201 0.98261 0.93779 0.87330 0.96799 0.91257 0.92311 0.81784 0.83966 0.81918 0.96050 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 10.09 55.49 0.56 -26.95 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -16.20 3.40 -170.07 -0.58 -16.78 16 10 C 0.15 3.91 5.89 -2.53 -0.01 3.89 16 11 C -0.13 -2.66 6.50 -24.58 -0.16 -2.82 16 12 C -0.04 -0.82 3.34 -89.94 -0.30 -1.12 16 13 H 0.10 1.82 8.13 -51.93 -0.42 1.39 16 14 C 0.35 6.20 6.48 -157.19 -1.02 5.18 16 15 N -0.50 -8.75 9.19 -10.73 -0.10 -8.84 16 16 C 0.15 1.90 11.31 -17.20 -0.19 1.71 16 17 C -0.25 -2.59 10.17 -39.32 -0.40 -2.99 16 18 C 0.14 1.71 11.30 -17.20 -0.19 1.52 16 19 N -0.52 -8.38 10.32 -10.72 -0.11 -8.49 16 20 C 0.15 3.47 6.79 -3.06 -0.02 3.45 16 21 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 22 H 0.11 3.06 5.87 -51.93 -0.30 2.76 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 1.48 7.72 -51.92 -0.40 1.07 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.80 7.28 -51.93 -0.38 0.42 16 LS Contribution 255.15 15.07 3.85 3.85 Total: -1.00 -32.62 255.15 -7.55 -40.17 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -3.59 Total: -2.38 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.55 Total: 1.92 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.23 Total: -61.07 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.62 -7.55 -40.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655713588.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.834 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds