Wall clock time and date at job start Mon Mar 30 2020 03:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48505 * 109.47060 * 269.99661 * 3 2 1 5 5 H 1.48490 * 109.47146 * 29.99949 * 3 2 1 6 6 H 1.48504 * 109.47142 * 150.00068 * 3 2 1 7 7 C 1.38817 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00529 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99583 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65329 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.83455 * 155.83780 * 10 9 7 12 12 C 1.55155 * 101.58222 * 37.00709 * 11 10 9 13 13 H 1.09004 * 110.71584 * 83.03693 * 12 11 10 14 14 C 1.50700 * 110.72276 * 206.13541 * 12 11 10 15 15 N 1.31795 * 119.12283 * 59.98322 * 14 12 11 16 16 C 1.32326 * 120.81968 * 180.02562 * 15 14 12 17 17 C 1.38605 * 119.10381 * 359.97438 * 16 15 14 18 18 C 1.38592 * 118.39963 * 359.97438 * 17 16 15 19 19 N 1.31793 * 119.12072 * 240.00391 * 14 12 11 20 20 C 1.47029 * 125.64437 * 179.97438 * 9 7 2 21 21 H 0.97003 * 119.99835 * 359.97438 * 1 2 3 22 22 H 1.09003 * 110.35928 * 36.99925 * 10 9 7 23 23 H 1.08999 * 110.36567 * 274.67843 * 10 9 7 24 24 H 1.09009 * 111.00050 * 278.93690 * 11 10 9 25 25 H 1.08991 * 111.03987 * 155.10169 * 11 10 9 26 26 H 1.07997 * 120.45199 * 180.27078 * 16 15 14 27 27 H 1.08001 * 120.79487 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.45142 * 180.02562 * 18 17 16 29 29 H 1.08995 * 109.87998 * 61.67995 * 20 9 7 30 30 H 1.08992 * 109.88151 * 300.50711 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1416 -2.5332 -0.0005 11 6 -0.4013 -3.9321 -0.6131 12 6 0.7783 -4.7524 -0.0275 13 1 0.5438 -5.1010 0.9783 14 6 1.1184 -5.9133 -0.9262 15 7 1.4902 -5.6757 -2.1681 16 6 1.7960 -6.6697 -2.9863 17 6 1.7215 -7.9731 -2.5209 18 6 1.3277 -8.1831 -1.2088 19 7 1.0359 -7.1392 -0.4494 20 6 1.9317 -3.7275 0.0005 21 1 -0.4850 0.8401 0.0004 22 1 -0.5988 -1.7586 -0.6162 23 1 -0.5281 -2.4871 1.0176 24 1 -0.3509 -3.8975 -1.7014 25 1 -1.3589 -4.3330 -0.2810 26 1 2.1041 -6.4679 -4.0015 27 1 1.9645 -8.8051 -3.1652 28 1 1.2587 -9.1851 -0.8116 29 1 2.5275 -3.8647 0.9029 30 1 2.5586 -3.8507 -0.8825 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655713588.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:41 Heat of formation + Delta-G solvation = 56.974135 kcal Electronic energy + Delta-G solvation = -14411.797698 eV Core-core repulsion = 12014.237740 eV Total energy + Delta-G solvation = -2397.559958 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.01674 -39.03219 -34.99546 -34.63120 -33.01922 -31.07403 -29.36314 -26.79674 -25.45405 -24.51502 -22.08783 -21.46157 -18.97032 -18.54033 -17.74993 -16.82117 -16.31290 -15.98597 -15.72103 -15.47532 -14.42283 -14.36397 -14.01618 -13.68413 -13.44484 -12.96382 -12.68948 -12.32140 -12.10515 -12.01186 -11.84192 -11.79567 -11.63720 -11.35396 -10.73921 -10.32828 -10.12374 -8.88884 -7.76680 -5.21435 -0.03762 0.24402 1.47330 1.50301 1.58946 2.49678 2.80582 2.89040 3.30527 3.34110 3.73750 3.81728 3.94456 4.10551 4.13129 4.28167 4.36324 4.60907 4.66146 4.77611 4.88719 4.98447 5.00113 5.28238 5.45901 5.51180 5.62623 5.79191 6.15778 6.30383 7.10849 7.21494 7.76762 8.42014 9.25990 Molecular weight = 219.11amu Principal moments of inertia in cm(-1) A = 0.059722 B = 0.006736 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.730007 B = 4155.896091 C = 4322.586101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.985 3.015 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.623 5.623 10 C 0.158 3.842 11 C -0.111 4.111 12 C -0.029 4.029 13 H 0.101 0.899 14 C 0.322 3.678 15 N -0.542 5.542 16 C 0.131 3.869 17 C -0.217 4.217 18 C 0.135 3.865 19 N -0.542 5.542 20 C 0.153 3.847 21 H 0.249 0.751 22 H 0.077 0.923 23 H -0.005 1.005 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.194 0.806 27 H 0.192 0.808 28 H 0.205 0.795 29 H 0.021 0.979 30 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 -17.002 -5.333 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.812 3.188 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.370 4.370 8 H 0.097 0.903 9 N -0.349 5.349 10 C 0.033 3.967 11 C -0.150 4.150 12 C -0.049 4.049 13 H 0.119 0.881 14 C 0.054 3.946 15 N -0.256 5.256 16 C -0.034 4.034 17 C -0.238 4.238 18 C -0.030 4.030 19 N -0.256 5.256 20 C 0.027 3.973 21 H 0.058 0.942 22 H 0.095 0.905 23 H 0.013 0.987 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.211 0.789 27 H 0.209 0.791 28 H 0.222 0.778 29 H 0.039 0.961 30 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.996 -16.048 -4.736 16.851 hybrid contribution 0.525 0.360 -0.390 0.747 sum 2.521 -15.688 -5.126 16.696 Atomic orbital electron populations 1.70043 1.06244 1.25157 1.58504 1.25667 0.96717 1.01016 1.02502 0.84988 0.77513 0.78708 0.77554 1.21111 1.21695 1.19559 1.19453 0.90984 0.83680 1.42848 0.90338 1.44751 1.02742 1.00600 1.86841 1.21720 0.84087 0.94152 0.96774 1.22852 0.96557 0.95641 0.99981 1.20855 0.96746 0.89969 0.97362 0.88097 1.22633 0.91096 0.91551 0.89287 1.68210 1.13137 1.38967 1.05294 1.23918 0.90469 0.88782 1.00216 1.23323 1.02006 0.99975 0.98511 1.23982 0.89226 0.98874 0.90877 1.68256 1.17312 1.00017 1.40029 1.21262 0.93944 0.84482 0.97620 0.94174 0.90512 0.98696 0.92046 0.89854 0.78914 0.79091 0.77809 0.96133 0.95506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 10.09 21.65 0.22 -58.13 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 4 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.24 -14.28 10.27 84.03 0.86 -13.41 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.62 -34.69 3.40 -691.98 -2.35 -37.04 16 10 C 0.16 8.31 5.89 86.85 0.51 8.83 16 11 C -0.11 -4.66 6.50 31.99 0.21 -4.45 16 12 C -0.03 -1.14 3.34 -10.35 -0.03 -1.17 16 13 H 0.10 3.83 8.13 -2.39 -0.02 3.81 16 14 C 0.32 11.28 6.48 138.75 0.90 12.18 16 15 N -0.54 -18.33 9.19 -187.85 -1.73 -20.05 16 16 C 0.13 2.99 11.31 84.71 0.96 3.95 16 17 C -0.22 -3.53 10.17 22.44 0.23 -3.30 16 18 C 0.14 2.69 11.30 84.70 0.96 3.65 16 19 N -0.54 -16.27 10.32 -187.84 -1.94 -18.21 16 20 C 0.15 7.16 6.79 86.73 0.59 7.75 16 21 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 22 H 0.08 4.54 5.87 -2.39 -0.01 4.53 16 23 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 24 H 0.06 2.66 7.72 -2.38 -0.02 2.65 16 25 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 26 H 0.19 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 28 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 1.29 7.28 -2.39 -0.02 1.27 16 Total: -1.00 -73.39 255.15 3.00 -70.38 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.13 Total: 3.44 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.64 Total: 10.56 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -5.80 Total: -133.43 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -73.39 3.00 -70.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655713588.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.359 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds