Wall clock time and date at job start Mon Mar 30 2020 03:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46730 * 2 1 4 4 C 1.50700 * 109.47307 * 240.00356 * 2 1 3 5 5 N 1.34760 * 126.03007 * 55.74869 * 4 2 1 6 6 H 0.96994 * 124.72228 * 0.04264 * 5 4 2 7 7 C 1.37274 * 110.55655 * 179.87613 * 5 4 2 8 8 C 1.34126 * 108.97913 * 0.41313 * 7 5 4 9 9 C 1.39195 * 126.03130 * 236.06977 * 4 2 1 10 10 C 1.41348 * 127.14312 * 359.93179 * 9 4 2 11 11 H 1.07996 * 119.99869 * 23.59312 * 10 9 4 12 12 C 1.39682 * 119.99616 * 203.59203 * 10 9 4 13 13 N 1.31051 * 120.00065 * 12.34549 * 12 10 9 14 14 Si 1.86803 * 119.99331 * 192.34687 * 12 10 9 15 15 H 1.48498 * 109.47411 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46830 * 120.00226 * 14 12 10 17 17 H 1.48500 * 109.46755 * 239.99779 * 14 12 10 18 18 C 1.51141 * 110.74365 * 179.72238 * 8 7 5 19 19 C 1.54463 * 104.88956 * 343.18419 * 18 8 7 20 20 C 1.51609 * 140.90684 * 180.09199 * 7 5 4 21 21 H 1.09002 * 109.47105 * 299.99656 * 1 2 3 22 22 H 1.09006 * 109.46970 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47499 * 59.99556 * 1 2 3 24 24 H 1.08998 * 109.47310 * 119.99969 * 2 1 3 25 25 H 1.09002 * 109.47045 * 60.00307 * 3 2 1 26 26 H 1.09004 * 109.46774 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47199 * 300.00037 * 3 2 1 28 28 H 0.97002 * 119.99543 * 174.94551 * 13 12 10 29 29 H 1.08998 * 110.35515 * 102.01167 * 18 8 7 30 30 H 1.08999 * 110.35241 * 224.30680 * 18 8 7 31 31 H 1.08996 * 110.94188 * 267.38865 * 19 18 8 32 32 H 1.09002 * 110.99722 * 143.67755 * 19 18 8 33 33 H 1.09000 * 110.33745 * 316.13919 * 20 7 5 34 34 H 1.09003 * 110.33195 * 78.26498 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 1.7183 -0.4060 -2.5052 6 1 1.1263 0.3147 -2.7713 7 6 2.3558 -1.2557 -3.3747 8 6 3.0879 -2.1317 -2.6706 9 6 2.8977 -1.8004 -1.2507 10 6 3.4743 -2.4531 -0.1374 11 1 2.9982 -2.3929 0.8301 12 6 4.6599 -3.1760 -0.2887 13 7 5.3653 -3.0555 -1.3866 14 14 5.2399 -4.3144 1.0741 15 1 4.2721 -4.2725 2.1996 16 1 5.3333 -5.7021 0.5535 17 1 6.5752 -3.8741 1.5521 18 6 3.8035 -3.0932 -3.5912 19 6 3.0759 -2.9604 -4.9472 20 6 2.4991 -1.5306 -4.8587 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8900 28 1 6.2244 -3.4996 -1.4623 29 1 4.8512 -2.8107 -3.6943 30 1 3.7201 -4.1124 -3.2139 31 1 2.2781 -3.6978 -5.0351 32 1 3.7773 -3.0470 -5.7770 33 1 1.5263 -1.4837 -5.3483 34 1 3.1852 -0.8150 -5.3119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260114708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:04 Heat of formation + Delta-G solvation = 27.113696 kcal Electronic energy + Delta-G solvation = -15113.028611 eV Core-core repulsion = 12817.714151 eV Total energy + Delta-G solvation = -2295.314460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.60258 -35.58526 -33.25068 -33.15624 -29.24793 -26.53404 -26.48981 -26.06284 -24.22079 -21.12080 -19.57534 -18.79205 -17.13399 -16.13193 -15.02996 -14.62283 -14.51732 -13.86235 -13.25287 -12.85342 -12.48778 -12.00506 -11.77711 -11.64715 -11.50540 -11.35406 -11.05739 -10.90323 -10.61107 -10.44755 -10.15690 -10.07556 -9.94429 -9.89189 -9.53418 -9.15046 -8.79804 -6.78644 -6.29048 -6.20809 -3.75177 3.17545 3.30422 3.35408 3.77208 4.27496 4.48803 4.56824 5.62404 5.65962 5.72546 5.77344 5.80494 5.84631 6.02278 6.15143 6.32086 6.34730 6.35536 6.48630 6.56294 6.62363 6.68827 6.87174 6.99684 7.01131 7.15524 7.38431 7.57420 7.61967 7.84730 7.96971 8.40199 8.68341 9.05351 9.19905 9.46588 9.47548 10.79272 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.014324 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.378684 B = 1954.282783 C = 3149.370428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.004 3.996 3 C -0.138 4.138 4 C -0.124 4.124 5 N -0.551 5.551 6 H 0.379 0.621 7 C -0.067 4.067 8 C -0.153 4.153 9 C 0.073 3.927 10 C -0.454 4.454 11 H 0.065 0.935 12 C 0.076 3.924 13 N -0.820 5.820 14 Si 0.895 3.105 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.282 1.282 18 C -0.015 4.015 19 C -0.126 4.126 20 C -0.023 4.023 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.266 0.734 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 3.073 -2.498 5.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.015 4.015 3 C -0.195 4.195 4 C -0.230 4.230 5 N -0.149 5.149 6 H 0.210 0.790 7 C -0.177 4.177 8 C -0.163 4.163 9 C 0.066 3.934 10 C -0.488 4.488 11 H 0.083 0.917 12 C -0.136 4.136 13 N -0.450 5.450 14 Si 0.721 3.279 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.208 1.208 18 C -0.053 4.053 19 C -0.164 4.164 20 C -0.061 4.061 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.058 0.942 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.356 3.033 -2.608 5.914 hybrid contribution 0.126 -0.150 0.487 0.525 sum -4.230 2.883 -2.121 5.541 Atomic orbital electron populations 1.21858 0.97153 1.01109 0.99686 1.19151 0.92913 0.93890 0.95588 1.21828 1.01544 0.96703 0.99453 1.19769 1.15358 1.05002 0.82904 1.40053 1.41507 1.28718 1.04585 0.78953 1.20535 1.05326 0.98957 0.92908 1.20949 1.02099 0.99958 0.93322 1.17689 0.93643 0.91450 0.90578 1.18635 1.06983 1.28205 0.94938 0.91699 1.25559 0.96715 0.95898 0.95439 1.69931 1.10718 1.38545 1.25822 0.86498 0.78607 0.80697 0.82064 1.19161 1.20539 1.20771 1.20098 0.98043 0.97648 0.89470 1.22450 0.99334 0.95317 0.99283 1.20356 0.98889 0.96916 0.89947 0.93866 0.92871 0.94210 0.90002 0.94025 0.92537 0.94271 0.92379 0.91161 0.93674 0.92416 0.92181 0.93615 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.17 37.16 0.34 -2.04 16 2 C 0.00 0.08 3.29 -91.77 -0.30 -0.22 16 3 C -0.14 -2.43 9.18 37.16 0.34 -2.09 16 4 C -0.12 -2.95 5.79 -80.95 -0.47 -3.41 16 5 N -0.55 -12.07 5.91 -4.47 -0.03 -12.10 16 6 H 0.38 7.05 8.96 -40.82 -0.37 6.69 16 7 C -0.07 -1.55 8.01 -81.16 -0.65 -2.20 16 8 C -0.15 -3.99 6.11 -102.29 -0.63 -4.62 16 9 C 0.07 2.01 5.88 -104.79 -0.62 1.39 16 10 C -0.45 -12.74 8.97 -37.86 -0.34 -13.08 16 11 H 0.06 1.78 7.24 -52.49 -0.38 1.40 16 12 C 0.08 2.05 5.41 -17.35 -0.09 1.96 16 13 N -0.82 -22.48 9.86 55.54 0.55 -21.93 16 14 Si 0.89 20.37 29.58 -169.99 -5.03 15.34 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.01 -0.34 5.11 -26.90 -0.14 -0.48 16 19 C -0.13 -2.34 7.14 -25.21 -0.18 -2.52 16 20 C -0.02 -0.43 6.79 -26.68 -0.18 -0.61 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.74 7.12 -51.93 -0.37 1.37 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 29 H 0.07 1.73 7.36 -51.93 -0.38 1.34 16 30 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -29.39 276.07 -8.54 -37.94 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.28 Total: 4.51 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -2.91 Total: -27.91 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.52 Total: -34.03 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.39 -8.54 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260114708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.051 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds