Wall clock time and date at job start Mon Mar 30 2020 02:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47077 * 2 1 4 4 C 1.46499 * 119.99912 * 269.99837 * 3 2 1 5 5 C 1.53002 * 109.47023 * 269.99786 * 4 3 2 6 6 C 1.39680 * 119.99793 * 89.99716 * 3 2 1 7 7 C 1.39334 * 119.95675 * 0.29175 * 6 3 2 8 8 C 1.38479 * 120.42758 * 180.25537 * 7 6 3 9 9 C 1.37691 * 120.32042 * 359.45475 * 8 7 6 10 10 C 1.40740 * 119.89587 * 0.26841 * 9 8 7 11 11 C 1.41409 * 120.20848 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00115 * 204.46599 * 11 10 9 13 13 C 1.39928 * 119.99954 * 24.46300 * 11 10 9 14 14 N 1.30828 * 119.99986 * 17.88258 * 13 11 10 15 15 Si 1.86806 * 119.99912 * 197.88290 * 13 11 10 16 16 H 1.48500 * 109.46810 * 90.00105 * 15 13 11 17 17 H 1.48497 * 109.47042 * 209.99807 * 15 13 11 18 18 H 1.48493 * 109.47158 * 330.00087 * 15 13 11 19 19 C 1.38284 * 119.94950 * 180.02562 * 6 3 2 20 20 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47290 * 300.00520 * 1 2 3 22 22 H 1.09002 * 109.46497 * 60.00520 * 1 2 3 23 23 H 1.08997 * 109.47234 * 239.99993 * 2 1 3 24 24 H 1.09006 * 109.46985 * 119.99576 * 2 1 3 25 25 H 1.09003 * 109.47180 * 29.99834 * 4 3 2 26 26 H 1.08996 * 109.46812 * 149.99941 * 4 3 2 27 27 H 1.08999 * 109.47241 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.47182 * 300.00047 * 5 4 3 29 29 H 1.09001 * 109.47020 * 59.99945 * 5 4 3 30 30 H 1.08009 * 119.78686 * 359.97438 * 7 6 3 31 31 H 1.07993 * 119.83934 * 179.72367 * 8 7 6 32 32 H 1.07995 * 120.04862 * 180.25220 * 9 8 7 33 33 H 0.97003 * 119.99659 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.16091 * 0.03751 * 19 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7076 1.8315 -1.7103 6 6 2.2511 2.0397 1.2097 7 6 2.0243 1.3800 2.4158 8 6 2.2468 2.0252 3.6207 9 6 2.7056 3.3232 3.6398 10 6 2.9447 4.0006 2.4296 11 6 3.4155 5.3340 2.4415 12 1 3.2323 5.9789 1.5947 13 6 4.1185 5.8178 3.5503 14 7 4.6445 4.9810 4.4075 15 14 4.3061 7.6587 3.8068 16 1 3.1700 8.1635 4.6191 17 1 5.5817 7.9322 4.5160 18 1 4.3154 8.3436 2.4893 19 6 2.7115 3.3437 1.2085 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.5818 1.6877 -2.0284 26 1 2.0956 3.1410 -1.1384 27 1 3.8895 2.3456 -2.6541 28 1 4.3884 2.2156 -0.9506 29 1 3.8746 0.7622 -1.8406 30 1 1.6684 0.3602 2.4109 31 1 2.0636 1.5062 4.5500 32 1 2.8815 3.8208 4.5821 33 1 5.1322 5.3165 5.1760 34 1 2.8912 3.8548 0.2743 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005139522.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:59 Heat of formation + Delta-G solvation = 15.861147 kcal Electronic energy + Delta-G solvation = -14701.196125 eV Core-core repulsion = 12405.393718 eV Total energy + Delta-G solvation = -2295.802407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.31462 -35.85429 -33.31583 -31.90929 -29.75245 -29.52434 -26.72249 -25.17227 -23.18452 -21.91586 -20.26777 -19.30497 -17.24044 -15.79530 -15.35223 -14.87598 -14.12044 -13.75703 -13.58797 -13.16782 -12.72573 -12.62240 -12.24023 -11.88802 -11.60814 -11.52298 -11.39831 -11.08089 -11.00911 -10.78236 -10.50702 -10.38066 -10.21711 -9.69333 -9.18965 -9.12196 -8.49205 -7.33599 -6.66813 -6.08135 -4.26544 2.89124 3.12071 3.15623 3.27270 3.41078 3.94894 4.02225 4.75699 5.32035 5.42361 5.56800 5.71065 5.76724 5.82873 5.93789 5.97824 6.11194 6.19029 6.25799 6.46808 6.49837 6.64097 6.65698 7.09335 7.14443 7.16368 7.33977 7.43753 7.84091 7.97129 8.17851 8.31630 8.47250 8.59560 8.85037 9.04901 9.17151 10.29107 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.038156 B = 0.007816 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.650289 B = 3581.556001 C = 4041.152947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.640 5.640 4 C 0.128 3.872 5 C -0.170 4.170 6 C 0.226 3.774 7 C -0.301 4.301 8 C -0.076 4.076 9 C -0.200 4.200 10 C 0.140 3.860 11 C -0.465 4.465 12 H 0.075 0.925 13 C 0.078 3.922 14 N -0.793 5.793 15 Si 0.905 3.095 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.288 4.288 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.278 0.722 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -4.685 -6.393 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.355 5.355 4 C 0.004 3.996 5 C -0.229 4.229 6 C 0.129 3.871 7 C -0.324 4.324 8 C -0.095 4.095 9 C -0.221 4.221 10 C 0.137 3.863 11 C -0.495 4.495 12 H 0.093 0.907 13 C -0.140 4.140 14 N -0.418 5.418 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.311 4.311 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.253 -4.758 -6.302 8.540 hybrid contribution 0.202 0.747 0.174 0.793 sum -3.051 -4.011 -6.128 7.934 Atomic orbital electron populations 1.22232 0.97630 1.00700 1.02251 1.21107 0.93137 0.84090 1.01264 1.46356 1.73710 1.12318 1.03074 1.21123 0.94985 0.98061 0.85425 1.22228 0.98774 1.00971 1.00904 1.17489 0.94089 0.91425 0.84079 1.19911 1.21443 0.99587 0.91446 1.20433 0.98614 0.95284 0.95136 1.21168 1.07414 0.94862 0.98634 1.17360 0.86473 0.92121 0.90343 1.19545 1.31198 0.96909 1.01865 0.90715 1.25879 0.93351 0.99785 0.94944 1.69867 1.24603 1.36335 1.11006 0.86373 0.78214 0.83027 0.79411 1.19353 1.20430 1.18722 1.20512 1.19286 0.94013 0.97319 0.92928 0.92088 0.93265 0.92578 0.91131 0.92633 0.90849 0.92851 0.91805 0.93422 0.89510 0.89737 0.86855 0.91102 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.24 37.16 0.38 -1.98 16 2 C 0.13 1.99 5.88 -4.04 -0.02 1.96 16 3 N -0.64 -11.97 2.61 -171.80 -0.45 -12.42 16 4 C 0.13 2.08 5.87 -4.04 -0.02 2.06 16 5 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 6 C 0.23 5.20 6.54 -83.86 -0.55 4.65 16 7 C -0.30 -6.99 9.22 -39.09 -0.36 -7.35 16 8 C -0.08 -1.86 10.02 -39.69 -0.40 -2.25 16 9 C -0.20 -5.42 8.70 -38.84 -0.34 -5.76 16 10 C 0.14 3.86 5.57 -106.85 -0.60 3.26 16 11 C -0.47 -12.72 9.05 -37.74 -0.34 -13.06 16 12 H 0.07 1.97 7.91 -52.48 -0.41 1.56 16 13 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 14 N -0.79 -21.11 10.96 55.55 0.61 -20.50 16 15 Si 0.91 19.13 29.60 -169.99 -5.03 14.10 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 19 C -0.29 -7.26 8.95 -38.67 -0.35 -7.61 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 24 H 0.07 1.14 6.17 -51.93 -0.32 0.82 16 25 H 0.06 0.76 8.07 -51.93 -0.42 0.35 16 26 H 0.07 1.28 6.19 -51.93 -0.32 0.96 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.81 6.11 -52.48 -0.32 1.49 16 31 H 0.08 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.11 3.16 6.15 -52.49 -0.32 2.84 16 33 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 34 H 0.09 2.23 6.12 -52.49 -0.32 1.91 16 LS Contribution 279.89 15.07 4.22 4.22 Total: -1.00 -28.39 279.89 -7.91 -36.30 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.95 Total: 4.64 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -2.30 Total: -26.34 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.16 Total: -32.92 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.39 -7.91 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005139522.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.164 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds