Wall clock time and date at job start Mon Mar 30 2020 02:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46896 * 109.47603 * 2 1 4 4 C 1.46893 * 111.00644 * 190.00118 * 3 2 1 5 5 C 1.50706 * 109.47176 * 66.04281 * 4 3 2 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 C 1.39679 * 110.99875 * 66.04645 * 3 2 1 14 14 C 1.38932 * 120.07463 * 63.67994 * 13 3 2 15 15 C 1.38082 * 119.92009 * 179.79321 * 14 13 3 16 16 C 1.38307 * 120.07812 * 0.48313 * 15 14 13 17 17 C 1.38266 * 120.14985 * 359.75005 * 16 15 14 18 18 C 1.38122 * 120.07384 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.03726 * 179.97438 * 18 17 16 20 20 H 1.09000 * 109.46985 * 299.99692 * 1 2 3 21 21 H 1.09005 * 109.47527 * 60.00080 * 1 2 3 22 22 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47251 * 239.99846 * 2 1 3 24 24 H 1.09000 * 109.47274 * 120.00604 * 2 1 3 25 25 H 1.09001 * 109.46739 * 306.04690 * 4 3 2 26 26 H 1.09000 * 109.47767 * 186.04949 * 4 3 2 27 27 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 28 28 H 1.07999 * 120.03460 * 0.02562 * 14 13 3 29 29 H 1.08003 * 119.95494 * 180.25502 * 15 14 13 30 30 H 1.07999 * 119.92316 * 179.76597 * 16 15 14 31 31 H 1.07993 * 119.95940 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.46981 * 270.02229 * 19 18 17 33 33 H 1.09002 * 109.46773 * 30.02604 * 19 18 17 34 34 H 1.09004 * 109.47061 * 150.02294 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4685 1.4311 -0.2382 5 6 3.7638 0.9464 -1.6342 6 1 2.9559 0.6356 -2.2801 7 6 5.0652 0.8997 -2.0869 8 7 6.0490 1.2778 -1.3002 9 14 5.4311 0.2996 -3.8177 10 1 4.7405 1.1724 -4.8006 11 1 6.8958 0.3462 -4.0584 12 1 4.9481 -1.0964 -3.9699 13 6 1.6875 2.0333 1.1917 14 6 2.2113 1.5848 2.3978 15 6 1.8841 2.2308 3.5735 16 6 1.0281 3.3170 3.5526 17 6 0.5012 3.7629 2.3546 18 6 0.8279 3.1243 1.1743 19 6 0.2527 3.6107 -0.1310 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.9758 0.7910 0.4836 26 1 3.8226 2.4559 -0.1268 27 1 6.9647 1.2453 -1.6189 28 1 2.8766 0.7342 2.4153 29 1 2.2942 1.8852 4.5109 30 1 0.7709 3.8181 4.4741 31 1 -0.1672 4.6111 2.3418 32 1 -0.6890 3.0978 -0.3265 33 1 0.0762 4.6847 -0.0724 34 1 0.9549 3.4013 -0.9380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019480319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:47 Heat of formation + Delta-G solvation = 5.360492 kcal Electronic energy + Delta-G solvation = -14894.531367 eV Core-core repulsion = 12598.273617 eV Total energy + Delta-G solvation = -2296.257750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88985 -37.69509 -34.80262 -33.50281 -31.94585 -30.76601 -28.38459 -27.10021 -24.38463 -24.12980 -22.22514 -21.11076 -18.61269 -17.49909 -16.84925 -16.45685 -16.16816 -15.80500 -15.15208 -14.61716 -14.30341 -14.18146 -14.02973 -13.83765 -13.09581 -12.93847 -12.88017 -12.72226 -12.58827 -12.36426 -12.08529 -12.07512 -11.91063 -11.79870 -11.33021 -10.63924 -9.64755 -9.31298 -9.15144 -8.22404 -6.33775 0.48472 0.53149 1.40002 1.43706 1.51611 2.38702 2.88908 3.09398 3.23554 4.05324 4.10609 4.20818 4.25754 4.40813 4.52469 4.62735 4.67458 4.83171 4.90734 4.96889 4.99062 5.08221 5.08991 5.12331 5.25395 5.36963 5.49270 5.61674 5.62096 5.64274 5.84176 6.05346 6.14238 6.23226 6.81280 6.87258 7.35963 8.88562 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034558 B = 0.008146 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.044894 B = 3436.401084 C = 3626.247167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.062 3.938 3 N -0.503 5.503 4 C 0.222 3.778 5 C -0.525 4.525 6 H 0.067 0.933 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.973 3.027 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.080 3.920 14 C -0.171 4.171 15 C -0.123 4.123 16 C -0.125 4.125 17 C -0.117 4.117 18 C -0.085 4.085 19 C -0.098 4.098 20 H 0.047 0.953 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.014 0.986 25 H -0.038 1.038 26 H -0.007 1.007 27 H 0.265 0.735 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.152 2.292 6.478 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.065 4.065 3 N -0.225 5.225 4 C 0.097 3.903 5 C -0.563 4.563 6 H 0.085 0.915 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.797 3.203 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.190 1.190 13 C -0.014 4.014 14 C -0.192 4.192 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.135 4.135 18 C -0.086 4.086 19 C -0.154 4.154 20 H 0.066 0.934 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.033 0.967 25 H -0.020 1.020 26 H 0.011 0.989 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.170 0.830 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.191 2.539 6.070 13.853 hybrid contribution 1.452 -0.896 -0.078 1.708 sum -10.739 1.642 5.992 12.407 Atomic orbital electron populations 1.21660 0.93166 1.02041 1.01807 1.22036 0.96711 0.87914 0.99833 1.59788 1.15869 1.16096 1.30727 1.19289 0.81836 0.93882 0.95321 1.21414 0.92659 1.43176 0.99025 0.91492 1.25961 0.95888 0.95500 1.02342 1.70106 1.00036 1.48940 1.38435 0.85390 0.76940 0.79170 0.78845 1.19186 1.20860 1.19047 1.19161 0.97110 0.96298 0.88811 1.21752 1.01473 1.01283 0.94669 1.21230 0.98879 0.96753 0.97328 1.21437 0.97278 0.96563 0.99031 1.21318 1.00565 1.00422 0.91226 1.20145 0.96829 0.94408 0.97175 1.20589 1.00480 1.00716 0.93640 0.93369 0.92049 0.90732 0.91349 0.96746 1.02021 0.98896 0.92660 0.88807 0.84530 0.82807 0.82985 0.90625 0.90489 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.89 71.98 0.71 -3.37 16 2 C 0.06 2.51 5.41 86.30 0.47 2.98 16 3 N -0.50 -22.93 3.43 -699.60 -2.40 -25.33 16 4 C 0.22 12.40 4.31 85.56 0.37 12.77 16 5 C -0.52 -30.34 8.37 25.60 0.21 -30.12 16 6 H 0.07 3.75 7.18 -2.91 -0.02 3.73 16 7 C 0.00 0.07 5.46 84.65 0.46 0.53 16 8 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 9 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.08 3.25 3.53 38.22 0.13 3.39 16 14 C -0.17 -6.62 8.58 22.40 0.19 -6.43 16 15 C -0.12 -3.74 10.04 22.25 0.22 -3.52 16 16 C -0.13 -3.21 10.04 22.29 0.22 -2.99 16 17 C -0.12 -3.17 9.70 22.25 0.22 -2.95 16 18 C -0.08 -2.88 5.89 -19.73 -0.12 -3.00 16 19 C -0.10 -3.00 9.77 71.24 0.70 -2.30 16 20 H 0.05 1.50 7.38 -2.39 -0.02 1.48 16 21 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.07 3.00 6.65 -2.39 -0.02 2.98 16 24 H 0.01 0.59 7.15 -2.39 -0.02 0.58 16 25 H -0.04 -2.30 7.49 -2.39 -0.02 -2.32 16 26 H -0.01 -0.44 8.06 -2.39 -0.02 -0.46 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.53 16 28 H 0.09 3.93 7.13 -2.91 -0.02 3.90 16 29 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 30 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 34 H 0.05 1.95 7.46 -2.38 -0.02 1.94 16 Total: -1.00 -66.53 282.04 4.76 -61.77 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.06 Total: 9.09 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.79 Total: -35.02 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.12 Total: -82.59 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -66.53 4.76 -61.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019480319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.131 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds