Wall clock time and date at job start Mon Mar 30 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 H 1.09001 * 109.47520 * 54.84083 * 3 2 1 5 5 C 1.50700 * 109.47296 * 174.84410 * 3 2 1 6 6 H 1.08001 * 120.00213 * 119.99120 * 5 3 2 7 7 C 1.37881 * 120.00111 * 299.99905 * 5 3 2 8 8 N 1.31516 * 119.99628 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00356 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46931 * 60.00165 * 9 7 5 11 11 H 1.48503 * 109.47131 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47155 * 300.00296 * 9 7 5 13 13 N 1.46501 * 109.47055 * 294.84198 * 3 2 1 14 14 C 1.39677 * 120.00156 * 157.77852 * 13 3 2 15 15 C 1.38932 * 120.07229 * 355.34055 * 14 13 3 16 16 C 1.38080 * 119.92169 * 179.72582 * 15 14 13 17 17 C 1.38301 * 120.07665 * 359.97438 * 16 15 14 18 18 C 1.38262 * 120.15168 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.96583 * 180.02562 * 18 17 16 20 20 C 1.38128 * 120.07456 * 0.02562 * 18 17 16 21 21 H 1.08999 * 109.47084 * 295.45144 * 1 2 3 22 22 H 1.09001 * 109.46749 * 55.44375 * 1 2 3 23 23 H 1.09003 * 109.47435 * 175.44530 * 1 2 3 24 24 H 1.09000 * 109.47020 * 239.99112 * 2 1 3 25 25 H 1.09005 * 109.46571 * 119.99646 * 2 1 3 26 26 H 0.97000 * 120.00084 * 180.02562 * 8 7 5 27 27 H 0.97004 * 120.00008 * 337.78111 * 13 3 2 28 28 H 1.08001 * 120.03942 * 359.74724 * 15 14 13 29 29 H 1.08005 * 119.95975 * 180.02562 * 16 15 14 30 30 H 1.08004 * 119.92442 * 179.97438 * 17 16 15 31 31 H 1.08997 * 109.47326 * 89.99955 * 19 18 17 32 32 H 1.09005 * 109.47863 * 210.00284 * 19 18 17 33 33 H 1.09002 * 109.47271 * 330.00927 * 19 18 17 34 34 H 1.07996 * 120.03742 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6033 1.9823 0.8402 5 6 3.5416 1.4443 0.1277 6 1 4.1489 1.8881 -0.6474 7 6 4.1402 0.8794 1.2339 8 7 3.4006 0.3385 2.1774 9 14 6.0014 0.8811 1.3919 10 1 6.4969 2.2810 1.3916 11 1 6.3909 0.2190 2.6628 12 1 6.5960 0.1453 0.2473 13 7 1.6557 2.0963 -1.2534 14 6 1.5809 3.4894 -1.3201 15 6 1.7757 4.2526 -0.1756 16 6 1.7067 5.6299 -0.2462 17 6 1.4445 6.2497 -1.4544 18 6 1.2502 5.4932 -2.5953 19 6 0.9653 6.1730 -3.9097 20 6 1.3168 4.1150 -2.5316 21 1 -0.3633 0.4416 0.9279 22 1 -0.3633 0.5829 -0.8464 23 1 -0.3634 -1.0244 -0.0816 24 1 1.8933 -0.5140 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.8216 -0.0586 2.9558 27 1 1.4532 1.5616 -2.0371 28 1 1.9813 3.7692 0.7681 29 1 1.8584 6.2238 0.6431 30 1 1.3906 7.3272 -1.5067 31 1 1.9042 6.3765 -4.4245 32 1 0.3453 5.5237 -4.5279 33 1 0.4404 7.1108 -3.7275 34 1 1.1653 3.5248 -3.4232 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036678235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:54 Heat of formation + Delta-G solvation = -6.573371 kcal Electronic energy + Delta-G solvation = -14625.998282 eV Core-core repulsion = 12329.223042 eV Total energy + Delta-G solvation = -2296.775241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26161 -37.71976 -34.68877 -33.40371 -32.77767 -30.04430 -28.17484 -27.47824 -24.91700 -23.15451 -22.27961 -20.86467 -18.51329 -17.86530 -17.02963 -16.69374 -15.98868 -15.19529 -14.98447 -14.59495 -14.47084 -14.13242 -13.92536 -13.40569 -13.25354 -13.12757 -12.84716 -12.79152 -12.65247 -12.25513 -11.97004 -11.72436 -11.70223 -11.49911 -11.40247 -10.51231 -10.43863 -9.44348 -8.28821 -7.86084 -6.27689 0.69481 0.95389 1.38285 1.39376 1.47086 2.38660 2.98600 3.12584 3.17799 4.14298 4.20308 4.44900 4.49695 4.54917 4.68048 4.70687 4.75347 4.87210 4.95065 5.03769 5.10549 5.15836 5.27943 5.31541 5.41753 5.55191 5.69530 5.70151 5.84833 5.93259 5.95662 6.25785 6.28446 6.60996 6.92905 7.26047 7.44979 8.88357 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.027369 B = 0.008662 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.798655 B = 3231.853832 C = 3803.720195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.284 3.716 4 H 0.006 0.994 5 C -0.538 4.538 6 H 0.041 0.959 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.273 1.273 13 N -0.731 5.731 14 C 0.221 3.779 15 C -0.224 4.224 16 C -0.079 4.079 17 C -0.201 4.201 18 C -0.048 4.048 19 C -0.106 4.106 20 C -0.224 4.224 21 H 0.035 0.965 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.264 0.736 27 H 0.392 0.608 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 7.059 -8.135 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.181 3.819 4 H 0.024 0.976 5 C -0.577 4.577 6 H 0.060 0.940 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.198 1.198 13 N -0.356 5.356 14 C 0.114 3.886 15 C -0.247 4.247 16 C -0.098 4.098 17 C -0.222 4.222 18 C -0.049 4.049 19 C -0.162 4.162 20 C -0.247 4.247 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.225 0.775 28 H 0.112 0.888 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.828 6.842 -7.753 11.412 hybrid contribution 1.129 -0.586 0.402 1.335 sum -3.699 6.255 -7.350 10.336 Atomic orbital electron populations 1.21684 0.96108 1.00900 1.00511 1.21682 0.94529 0.98170 1.01811 1.18351 0.92258 0.89682 0.81644 0.97609 1.21782 0.93333 1.37385 1.05179 0.94021 1.25568 1.02036 0.94892 0.95349 1.69951 1.36375 1.39030 1.09809 0.85739 0.81081 0.78095 0.77496 1.20443 1.20426 1.19828 1.45083 1.74011 1.02436 1.14111 1.18148 0.91932 0.84540 0.93967 1.20764 1.11440 0.94882 0.97568 1.21057 0.96860 0.93168 0.98697 1.20917 1.09004 1.00078 0.92156 1.19971 0.95729 0.92521 0.96661 1.20790 1.02338 1.00598 0.92507 1.20607 1.13269 0.95121 0.95668 0.94603 0.93012 0.92286 0.94138 0.90475 0.92654 0.77450 0.88785 0.85480 0.84491 0.90523 0.90979 0.90178 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.85 71.98 0.71 -4.38 16 2 C -0.12 -5.65 5.30 30.59 0.16 -5.48 16 3 C 0.28 14.14 1.68 44.24 0.07 14.21 16 4 H 0.01 0.35 6.45 -2.39 -0.02 0.33 16 5 C -0.54 -29.71 8.70 25.60 0.22 -29.48 16 6 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 7 C 0.02 1.16 5.29 84.66 0.45 1.61 16 8 N -0.91 -51.41 11.29 21.45 0.24 -51.17 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 13 N -0.73 -31.25 4.65 -322.51 -1.50 -32.75 16 14 C 0.22 9.15 6.59 38.21 0.25 9.40 16 15 C -0.22 -9.65 9.18 22.40 0.21 -9.45 16 16 C -0.08 -2.82 10.04 22.25 0.22 -2.60 16 17 C -0.20 -6.16 9.70 22.29 0.22 -5.95 16 18 C -0.05 -1.44 5.88 -19.89 -0.12 -1.56 16 19 C -0.11 -2.18 10.01 71.23 0.71 -1.47 16 20 C -0.22 -7.70 9.55 22.40 0.21 -7.49 16 21 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.05 1.81 7.62 -2.39 -0.02 1.79 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 25 H 0.08 4.01 5.95 -2.38 -0.01 3.99 16 26 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.39 14.86 8.57 -92.71 -0.79 14.07 16 28 H 0.09 4.65 6.21 -2.91 -0.02 4.63 16 29 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.34 8.08 -2.38 -0.02 1.32 16 33 H 0.08 1.36 8.08 -2.39 -0.02 1.35 16 34 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -59.88 282.39 4.37 -55.51 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.28 Total: 25.00 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 3.32 Total: -42.63 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -1.26 Total: -83.92 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -59.88 4.37 -55.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036678235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.932 kcal (2) G-P(sol) polarization free energy of solvation -59.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds