Wall clock time and date at job start Mon Mar 30 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47417 * 2 1 4 4 H 1.08999 * 109.46440 * 305.80511 * 3 2 1 5 5 C 1.50699 * 109.46984 * 185.80684 * 3 2 1 6 6 H 1.07998 * 120.00206 * 335.21365 * 5 3 2 7 7 C 1.37876 * 119.99900 * 155.21979 * 5 3 2 8 8 N 1.31513 * 119.99898 * 355.33898 * 7 5 3 9 9 Si 1.86799 * 120.00208 * 175.33600 * 7 5 3 10 10 H 1.48507 * 109.46796 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47125 * 119.99846 * 9 7 5 12 12 H 1.48495 * 109.47217 * 239.99899 * 9 7 5 13 13 N 1.46501 * 109.46765 * 65.80292 * 3 2 1 14 14 C 1.39671 * 120.00185 * 274.99788 * 13 3 2 15 15 C 1.38931 * 120.07467 * 0.02562 * 14 13 3 16 16 C 1.38085 * 119.92761 * 179.97438 * 15 14 13 17 17 C 1.38314 * 120.07129 * 359.97438 * 16 15 14 18 18 C 1.38265 * 120.15003 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.96419 * 180.02562 * 18 17 16 20 20 C 1.38131 * 120.07340 * 359.75597 * 18 17 16 21 21 H 1.08995 * 109.47304 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46685 * 300.00447 * 1 2 3 23 23 H 1.08998 * 109.46854 * 59.99598 * 1 2 3 24 24 H 1.08999 * 109.46685 * 239.99553 * 2 1 3 25 25 H 1.09003 * 109.46721 * 119.99931 * 2 1 3 26 26 H 0.97004 * 120.00178 * 5.26786 * 8 7 5 27 27 H 0.97001 * 119.99385 * 95.01008 * 13 3 2 28 28 H 1.07999 * 120.03766 * 359.95483 * 15 14 13 29 29 H 1.07992 * 119.96737 * 179.97438 * 16 15 14 30 30 H 1.08002 * 119.92499 * 179.97438 * 17 16 15 31 31 H 1.09000 * 109.47037 * 89.99883 * 19 18 17 32 32 H 1.08997 * 109.47486 * 210.00945 * 19 18 17 33 33 H 1.09011 * 109.46893 * 330.00334 * 19 18 17 34 34 H 1.07998 * 120.03658 * 180.27520 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5944 1.9854 -0.8335 5 6 3.5403 1.4448 -0.1438 6 1 4.1138 0.5838 0.1662 7 6 4.1806 2.5462 -0.6709 8 7 3.4774 3.5571 -1.1327 9 14 6.0468 2.6027 -0.7290 10 1 6.5981 1.3503 -0.1520 11 1 6.4943 2.7367 -2.1386 12 1 6.5315 3.7657 0.0568 13 7 1.6692 2.0916 1.2599 14 6 0.4094 2.6785 1.3987 15 6 -0.4933 2.6473 0.3431 16 6 -1.7382 3.2281 0.4837 17 6 -2.0869 3.8400 1.6741 18 6 -1.1910 3.8728 2.7267 19 6 -1.5755 4.5401 4.0219 20 6 0.0543 3.2898 2.5941 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5125 3.5623 -1.0335 27 1 2.2986 2.1138 1.9976 28 1 -0.2217 2.1696 -0.5867 29 1 -2.4402 3.2046 -0.3365 30 1 -3.0611 4.2939 1.7814 31 1 -2.0439 3.8098 4.6818 32 1 -0.6839 4.9440 4.5014 33 1 -2.2772 5.3494 3.8194 34 1 0.7520 3.3120 3.4182 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036678236.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:56 Heat of formation + Delta-G solvation = 7.144886 kcal Electronic energy + Delta-G solvation = -14857.072485 eV Core-core repulsion = 12560.892112 eV Total energy + Delta-G solvation = -2296.180373 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.02335 -36.19528 -32.79245 -31.80747 -31.65895 -28.57686 -26.52343 -25.75203 -23.06597 -21.76380 -21.06303 -19.22778 -17.27159 -16.23844 -15.40185 -14.75777 -14.13848 -13.86744 -13.62673 -13.32229 -13.18483 -12.85283 -12.47280 -12.25127 -11.80505 -11.64439 -11.16779 -10.87784 -10.84514 -10.68438 -10.42385 -10.37141 -10.21730 -9.79829 -9.06637 -8.79036 -8.47587 -8.05347 -6.55815 -6.35045 -4.36271 2.07484 2.37090 3.34858 3.36658 3.51225 4.36383 4.52876 4.57831 5.34698 5.37595 5.42431 5.73541 5.75760 5.85623 5.87945 5.94569 6.08942 6.09909 6.13984 6.27330 6.54150 6.60512 6.63350 6.69959 6.83569 6.95496 7.13172 7.15309 7.23861 7.29830 7.64424 7.85747 8.24735 8.53975 8.67307 8.94470 9.44034 10.82009 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.031838 B = 0.008461 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.248526 B = 3308.317398 C = 3723.715193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C 0.245 3.755 4 H 0.045 0.955 5 C -0.609 4.609 6 H 0.055 0.945 7 C 0.031 3.969 8 N -0.891 5.891 9 Si 1.074 2.926 10 H -0.288 1.288 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.719 5.719 14 C 0.238 3.762 15 C -0.210 4.210 16 C -0.074 4.074 17 C -0.209 4.209 18 C -0.045 4.045 19 C -0.109 4.109 20 C -0.222 4.222 21 H 0.033 0.967 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.277 0.723 27 H 0.386 0.614 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.210 -1.246 5.376 9.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C 0.144 3.856 4 H 0.063 0.937 5 C -0.648 4.648 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.525 5.525 9 Si 0.902 3.098 10 H -0.213 1.213 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.341 5.341 14 C 0.128 3.872 15 C -0.233 4.233 16 C -0.093 4.093 17 C -0.230 4.230 18 C -0.045 4.045 19 C -0.166 4.166 20 C -0.246 4.246 21 H 0.052 0.948 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.220 0.780 28 H 0.143 0.857 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.844 -0.467 4.625 7.467 hybrid contribution -1.047 -0.883 0.814 1.594 sum -6.891 -1.350 5.439 8.882 Atomic orbital electron populations 1.22224 0.97674 0.99646 1.01730 1.21918 0.93825 0.99781 1.00616 1.18874 0.95363 0.88136 0.83248 0.93729 1.22130 0.91148 1.04098 1.47396 0.92656 1.25980 1.07185 0.92477 0.92087 1.70705 1.09635 1.32366 1.39744 0.83482 0.73848 0.75604 0.76903 1.21346 1.21093 1.21234 1.46726 1.11250 1.58440 1.17719 1.18184 0.86845 0.89541 0.92656 1.20921 0.94802 1.08020 0.99519 1.20740 0.95711 0.96210 0.96644 1.20460 0.99689 1.08279 0.94594 1.19462 0.93518 0.96512 0.95057 1.20733 1.01315 0.99611 0.94946 1.20372 0.97954 1.08700 0.97573 0.94767 0.92017 0.93174 0.92454 0.93437 0.91171 0.78026 0.85743 0.87357 0.87768 0.91858 0.92122 0.92143 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.23 37.16 0.31 -2.55 16 2 C -0.12 -2.55 5.58 -26.73 -0.15 -2.70 16 3 C 0.24 5.81 1.92 -69.08 -0.13 5.68 16 4 H 0.04 1.16 5.02 -51.93 -0.26 0.90 16 5 C -0.61 -16.05 8.50 -34.44 -0.29 -16.34 16 6 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 7 C 0.03 0.85 5.45 -17.82 -0.10 0.76 16 8 N -0.89 -25.92 13.62 55.43 0.76 -25.16 16 9 Si 1.07 24.16 29.91 -169.99 -5.08 19.08 16 10 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 13 N -0.72 -15.88 5.19 -53.29 -0.28 -16.16 16 14 C 0.24 4.93 5.52 -83.79 -0.46 4.47 16 15 C -0.21 -4.18 6.71 -39.38 -0.26 -4.44 16 16 C -0.07 -1.31 10.04 -39.61 -0.40 -1.70 16 17 C -0.21 -3.51 9.70 -39.54 -0.38 -3.89 16 18 C -0.04 -0.76 5.88 -104.65 -0.62 -1.37 16 19 C -0.11 -1.43 10.01 36.00 0.36 -1.07 16 20 C -0.22 -4.20 9.55 -39.38 -0.38 -4.58 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 1.18 5.36 -51.93 -0.28 0.90 16 23 H 0.05 0.90 6.41 -51.93 -0.33 0.57 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.28 8.13 6.66 -40.82 -0.27 7.86 16 27 H 0.39 8.41 8.61 -40.82 -0.35 8.06 16 28 H 0.12 2.56 3.99 -52.49 -0.21 2.35 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.06 0.71 8.09 -51.92 -0.42 0.29 16 34 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 273.90 15.07 4.13 4.13 Total: -1.00 -27.98 273.90 -7.69 -35.67 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.71 Total: 10.19 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -2.50 Total: -27.74 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.48 Total: -41.32 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.98 -7.69 -35.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036678236.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.814 kcal (2) G-P(sol) polarization free energy of solvation -27.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds