Wall clock time and date at job start Mon Mar 30 2020 02:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46775 * 2 1 4 4 H 1.08997 * 109.47142 * 55.00665 * 3 2 1 5 5 C 1.50708 * 109.46647 * 175.00167 * 3 2 1 6 6 H 1.08002 * 119.99779 * 120.00129 * 5 3 2 7 7 C 1.37878 * 120.00231 * 299.99566 * 5 3 2 8 8 N 1.31507 * 120.00064 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99675 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47379 * 89.99788 * 9 7 5 11 11 H 1.48507 * 109.47040 * 209.99682 * 9 7 5 12 12 H 1.48499 * 109.47297 * 329.99458 * 9 7 5 13 13 N 1.46500 * 109.47294 * 294.99833 * 3 2 1 14 14 C 1.39676 * 119.99636 * 85.00037 * 13 3 2 15 15 C 1.38906 * 120.07135 * 179.97438 * 14 13 3 16 16 C 1.38111 * 119.92343 * 180.02562 * 15 14 13 17 17 C 1.38288 * 120.07382 * 0.28047 * 16 15 14 18 18 C 1.50698 * 119.92407 * 179.69843 * 17 16 15 19 19 C 1.38286 * 120.14755 * 359.44532 * 17 16 15 20 20 C 1.38112 * 120.07587 * 0.55318 * 19 17 16 21 21 H 1.09003 * 109.47344 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47153 * 299.99839 * 1 2 3 23 23 H 1.09000 * 109.47710 * 59.99907 * 1 2 3 24 24 H 1.08999 * 109.47153 * 240.00161 * 2 1 3 25 25 H 1.08999 * 109.47230 * 119.99867 * 2 1 3 26 26 H 0.97006 * 120.00013 * 180.02562 * 8 7 5 27 27 H 0.96995 * 120.00066 * 265.00631 * 13 3 2 28 28 H 1.07999 * 120.03932 * 0.04675 * 15 14 13 29 29 H 1.08002 * 119.96028 * 179.97438 * 16 15 14 30 30 H 1.09001 * 109.46763 * 90.00407 * 18 17 16 31 31 H 1.09001 * 109.46776 * 210.00059 * 18 17 16 32 32 H 1.09003 * 109.47041 * 330.00009 * 18 17 16 33 33 H 1.08002 * 119.96005 * 180.25011 * 19 17 16 34 34 H 1.07998 * 120.03682 * 179.74419 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4539 0.8805 1.3362 9 14 3.0964 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7937 0.2349 3.8752 12 1 1.7877 0.8075 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.3907 2.6850 -1.3711 15 6 0.0219 3.3069 -2.5571 16 6 -1.2262 3.8872 -2.6715 17 6 -2.1059 3.8547 -1.6051 18 6 -3.4643 4.4950 -1.7313 19 6 -1.7440 3.2315 -0.4249 20 6 -0.4975 2.6491 -0.3037 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.8771 0.4820 2.1128 27 1 2.2718 2.1232 -1.9978 28 1 0.7100 3.3363 -3.3889 29 1 -1.5134 4.3713 -3.5933 30 1 -4.1779 3.7618 -2.1073 31 1 -3.7902 4.8513 -0.7541 32 1 -3.4072 5.3348 -2.4238 33 1 -2.4350 3.2044 0.4047 34 1 -0.2139 2.1662 0.6197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036680084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:57 Heat of formation + Delta-G solvation = 23.188005 kcal Electronic energy + Delta-G solvation = -14797.903851 eV Core-core repulsion = 12502.419160 eV Total energy + Delta-G solvation = -2295.484691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22975 -36.39296 -33.10237 -31.94885 -30.64349 -30.08453 -27.59629 -24.97833 -22.71130 -22.56595 -20.95866 -19.47974 -17.54941 -16.00379 -15.79038 -14.92123 -14.44267 -14.01854 -13.72229 -13.36237 -13.15451 -13.01082 -12.70785 -12.25713 -11.97917 -11.80169 -11.62943 -11.18831 -11.06490 -10.74853 -10.68527 -10.39961 -9.94389 -9.52346 -9.32231 -9.13340 -8.67085 -8.40551 -6.55539 -6.23612 -4.25685 1.92711 2.12269 3.17837 3.28278 3.30275 4.25645 4.35269 4.37225 5.08469 5.25219 5.32030 5.51785 5.60126 5.78305 5.81775 5.88749 5.95075 5.99241 6.04086 6.19691 6.35838 6.45709 6.54509 6.58290 6.73226 6.78394 6.92670 6.93748 7.13755 7.22018 7.41662 7.47132 8.00938 8.42864 8.62547 8.80361 9.36683 10.88923 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.045532 B = 0.007839 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.807168 B = 3570.889718 C = 3837.235571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C 0.246 3.754 4 H 0.038 0.962 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.264 1.264 13 N -0.717 5.717 14 C 0.232 3.768 15 C -0.213 4.213 16 C -0.072 4.072 17 C -0.174 4.174 18 C -0.097 4.097 19 C -0.074 4.074 20 C -0.202 4.202 21 H 0.036 0.964 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.267 0.733 27 H 0.395 0.605 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 2.820 -4.224 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C 0.142 3.858 4 H 0.056 0.944 5 C -0.570 4.570 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.189 1.189 13 N -0.340 5.340 14 C 0.123 3.877 15 C -0.237 4.237 16 C -0.091 4.091 17 C -0.177 4.177 18 C -0.154 4.154 19 C -0.093 4.093 20 C -0.225 4.225 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.229 0.771 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.246 2.660 -3.905 14.063 hybrid contribution -0.052 -0.578 0.496 0.763 sum -13.298 2.082 -3.409 13.885 Atomic orbital electron populations 1.22244 0.97567 1.00047 1.01655 1.22386 0.93972 1.00588 1.01267 1.19082 0.95792 0.88020 0.82939 0.94399 1.21059 0.88763 1.39466 1.07734 0.90288 1.24866 0.94878 0.95233 0.97710 1.69870 1.08702 1.44518 1.29821 0.86867 0.80633 0.79906 0.80974 1.20258 1.22126 1.18886 1.45160 1.12452 1.59184 1.17225 1.18006 0.86255 0.90255 0.93136 1.20508 0.98346 1.07373 0.97448 1.20580 0.93043 0.98093 0.97351 1.19447 0.97180 1.05873 0.95181 1.20560 0.94085 0.99343 1.01436 1.20671 0.95595 0.96482 0.96573 1.21017 0.94813 1.07152 0.99508 0.94452 0.93198 0.91830 0.92030 0.92884 0.92281 0.77100 0.86886 0.87193 0.92608 0.92583 0.92625 0.87135 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.22 37.16 0.31 -2.58 16 2 C -0.14 -3.05 5.11 -26.73 -0.14 -3.19 16 3 C 0.25 5.62 1.79 -69.08 -0.12 5.49 16 4 H 0.04 0.91 5.54 -51.93 -0.29 0.62 16 5 C -0.53 -14.36 9.31 -34.44 -0.32 -14.68 16 6 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 7 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 8 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 9 Si 0.89 21.21 24.41 -169.99 -4.15 17.06 16 10 H -0.28 -6.43 6.83 56.52 0.39 -6.05 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.02 6.53 56.52 0.37 -5.66 16 13 N -0.72 -14.42 5.18 -53.29 -0.28 -14.70 16 14 C 0.23 4.27 5.48 -83.79 -0.46 3.81 16 15 C -0.21 -3.49 9.90 -39.38 -0.39 -3.88 16 16 C -0.07 -1.06 9.69 -39.61 -0.38 -1.45 16 17 C -0.17 -2.54 5.88 -104.59 -0.62 -3.16 16 18 C -0.10 -1.10 10.01 36.00 0.36 -0.74 16 19 C -0.07 -1.16 9.69 -39.61 -0.38 -1.55 16 20 C -0.20 -3.61 6.72 -39.38 -0.26 -3.88 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.88 6.35 -51.93 -0.33 0.55 16 23 H 0.06 1.15 5.39 -51.93 -0.28 0.87 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.05 1.19 3.21 -51.93 -0.17 1.02 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 27 H 0.39 7.60 8.55 -40.82 -0.35 7.25 16 28 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.13 2.40 4.01 -52.49 -0.21 2.19 16 LS Contribution 265.38 15.07 4.00 4.00 Total: -1.00 -28.41 265.38 -6.76 -35.17 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.60 Total: 7.88 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -2.51 Total: -23.75 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.50 Total: -40.36 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.15 Total: 17.06 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.41 -6.76 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036680084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.358 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds