Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47420 * 2 1 4 4 H 1.09003 * 109.46850 * 304.36700 * 3 2 1 5 5 C 1.50701 * 109.47139 * 184.36649 * 3 2 1 6 6 H 1.07995 * 119.99962 * 245.43315 * 5 3 2 7 7 C 1.37874 * 119.99940 * 65.42973 * 5 3 2 8 8 N 1.31512 * 120.00012 * 193.46138 * 7 5 3 9 9 Si 1.86803 * 120.00283 * 13.46873 * 7 5 3 10 10 H 1.48504 * 109.47373 * 84.55184 * 9 7 5 11 11 H 1.48497 * 109.47504 * 204.55519 * 9 7 5 12 12 H 1.48505 * 109.46654 * 324.55704 * 9 7 5 13 13 N 1.46495 * 109.47001 * 64.36374 * 3 2 1 14 14 C 1.39677 * 119.99665 * 205.92365 * 13 3 2 15 15 C 1.38932 * 120.07532 * 354.16996 * 14 13 3 16 16 C 1.38084 * 119.92342 * 180.27262 * 15 14 13 17 17 C 1.38311 * 120.07496 * 359.73181 * 16 15 14 18 18 C 1.38270 * 120.14870 * 359.97438 * 17 16 15 19 19 C 1.38118 * 120.07475 * 0.04703 * 18 17 16 20 20 C 1.50703 * 120.03705 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.46765 * 304.71453 * 1 2 3 22 22 H 1.08995 * 109.47162 * 64.71127 * 1 2 3 23 23 H 1.08994 * 109.47688 * 184.71761 * 1 2 3 24 24 H 1.08996 * 109.46743 * 239.99443 * 2 1 3 25 25 H 1.09003 * 109.46806 * 120.00207 * 2 1 3 26 26 H 0.97004 * 120.00144 * 180.02562 * 8 7 5 27 27 H 0.97000 * 120.00522 * 25.92592 * 13 3 2 28 28 H 1.07991 * 120.04054 * 0.02562 * 15 14 13 29 29 H 1.07993 * 119.96540 * 179.70664 * 16 15 14 30 30 H 1.07995 * 119.92601 * 179.97438 * 17 16 15 31 31 H 1.07996 * 119.95857 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.46818 * 89.99845 * 20 19 18 33 33 H 1.08994 * 109.47044 * 330.00025 * 20 19 18 34 34 H 1.08996 * 109.46929 * 209.99510 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6143 1.9784 -0.8483 5 6 3.5432 1.4438 -0.1082 6 1 4.1432 1.8114 0.7111 7 6 4.1524 0.9756 -1.2530 8 7 5.4437 0.7267 -1.2560 9 14 3.1435 0.6950 -2.8000 10 1 3.0187 1.9718 -3.5480 11 1 3.8178 -0.3153 -3.6542 12 1 1.7919 0.2055 -2.4273 13 7 1.6395 2.1020 1.2452 14 6 1.4889 3.4901 1.2830 15 6 1.8345 4.2583 0.1782 16 6 1.6896 5.6309 0.2210 17 6 1.1960 6.2405 1.3602 18 6 0.8454 5.4784 2.4593 19 6 0.9881 4.1051 2.4233 20 6 0.6063 3.2754 3.6220 21 1 -0.3633 0.5853 0.8448 22 1 -0.3633 0.4390 -0.9291 23 1 -0.3634 -1.0241 0.0845 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 5.8724 0.3977 -2.0616 27 1 1.4788 1.5749 2.0434 28 1 2.2197 3.7829 -0.7117 29 1 1.9625 6.2291 -0.6357 30 1 1.0841 7.3142 1.3912 31 1 0.4598 5.9576 3.3470 32 1 -0.4416 2.9856 3.5444 33 1 0.7555 3.8590 4.5303 34 1 1.2288 2.3813 3.6582 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036987547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = 17.116966 kcal Electronic energy + Delta-G solvation = -14896.762781 eV Core-core repulsion = 12601.014830 eV Total energy + Delta-G solvation = -2295.747951 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01357 -36.09620 -32.88959 -32.03419 -31.61713 -28.47844 -27.11006 -26.09262 -22.85629 -21.81977 -20.53097 -19.62835 -17.08197 -16.58632 -15.51239 -14.93236 -14.36414 -13.77567 -13.49948 -13.37211 -13.01737 -12.69850 -12.55533 -12.08495 -11.97934 -11.85308 -11.62632 -11.15382 -10.85624 -10.66831 -10.55247 -10.34743 -9.99847 -9.85118 -9.42337 -8.97111 -8.49888 -8.11990 -6.47926 -6.16971 -4.13754 2.04747 2.32497 3.21267 3.29294 3.33003 4.32396 4.42193 4.53119 5.10865 5.38412 5.45503 5.69793 5.71851 5.81148 5.85125 5.94912 5.99846 6.04751 6.13588 6.36228 6.46061 6.50759 6.54147 6.65895 6.73974 6.91527 7.04871 7.13407 7.16318 7.28632 7.57889 7.62509 8.15157 8.49665 8.68336 8.94075 9.46699 10.96024 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.009979 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.538940 B = 2805.339066 C = 3216.121060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.032 0.968 5 C -0.531 4.531 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.889 5.889 9 Si 0.855 3.145 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.249 1.249 13 N -0.722 5.722 14 C 0.243 3.757 15 C -0.184 4.184 16 C -0.081 4.081 17 C -0.200 4.200 18 C -0.078 4.078 19 C -0.188 4.188 20 C -0.097 4.097 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.264 0.736 27 H 0.387 0.613 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 4.086 4.359 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.049 0.951 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.526 5.526 9 Si 0.682 3.318 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.347 5.347 14 C 0.135 3.865 15 C -0.207 4.207 16 C -0.100 4.100 17 C -0.220 4.220 18 C -0.097 4.097 19 C -0.193 4.193 20 C -0.154 4.154 21 H 0.069 0.931 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.147 0.853 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.876 3.874 4.044 11.353 hybrid contribution -0.233 -0.356 -0.683 0.804 sum -10.110 3.518 3.361 11.219 Atomic orbital electron populations 1.21839 0.97861 1.00020 1.01125 1.22264 0.93369 0.99509 1.02384 1.18977 0.95062 0.88559 0.82920 0.95079 1.21392 0.89536 1.42778 1.03261 0.90586 1.24899 0.94734 0.94374 0.98575 1.69952 1.10230 1.43884 1.28570 0.87391 0.81790 0.78596 0.84013 1.20170 1.21301 1.17382 1.45029 1.73522 1.02687 1.13415 1.17689 0.91309 0.84645 0.92876 1.20863 1.06728 0.93481 0.99603 1.20827 0.97609 0.94217 0.97359 1.20646 1.07829 0.98678 0.94883 1.20561 0.98927 0.92579 0.97623 1.19275 1.09789 0.94261 0.96023 1.20493 1.00512 0.98991 0.95441 0.93131 0.93640 0.94037 0.91025 0.92373 0.92559 0.77819 0.85274 0.87140 0.87587 0.87371 0.92461 0.92360 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.85 37.16 0.37 -2.19 16 2 C -0.14 -2.77 4.82 -26.73 -0.13 -2.90 16 3 C 0.25 5.57 1.22 -69.08 -0.08 5.48 16 4 H 0.03 0.73 5.45 -51.93 -0.28 0.44 16 5 C -0.53 -14.32 8.87 -34.44 -0.31 -14.63 16 6 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 7 C 0.08 2.14 5.36 -17.82 -0.10 2.05 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 9 Si 0.86 20.20 25.87 -169.99 -4.40 15.80 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.25 -5.44 5.32 56.52 0.30 -5.14 16 13 N -0.72 -14.44 4.48 -53.29 -0.24 -14.67 16 14 C 0.24 4.80 6.61 -83.78 -0.55 4.24 16 15 C -0.18 -3.75 9.07 -39.38 -0.36 -4.10 16 16 C -0.08 -1.44 10.04 -39.61 -0.40 -1.83 16 17 C -0.20 -3.22 10.04 -39.54 -0.40 -3.62 16 18 C -0.08 -1.24 9.70 -39.61 -0.38 -1.63 16 19 C -0.19 -3.24 5.90 -104.42 -0.62 -3.85 16 20 C -0.10 -1.36 9.63 36.01 0.35 -1.02 16 21 H 0.05 0.81 7.61 -51.93 -0.39 0.41 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.54 4.69 -51.93 -0.24 1.29 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.39 7.00 6.57 -40.82 -0.27 6.74 16 28 H 0.13 2.86 6.18 -52.49 -0.32 2.54 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 LS Contribution 273.10 15.07 4.12 4.12 Total: -1.00 -28.89 273.10 -7.24 -36.13 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -4.89 Total: 8.33 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.61 Total: -24.00 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.53 Total: -40.37 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.40 Total: 15.80 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.89 -7.24 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.244 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds